Parental gene:

H3F3A, ENSG00000163041

Aliases:H3F3A, H3.3A, H3F3
Description:H3 histone, family 3A [Source:HGNC Symbol;Acc:4764]
Organism:Human (Homo sapiens)
Coordinates:1:226249551..226259702(+)


>ENSG00000163041
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCGCTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATCGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
bodymap2_liver 7 .39 RPM
bodymap2_lung 24 .77 RPM
bodymap2_breast 7 .20 RPM
bodymap2_adipose 5 .69 RPM
bodymap2_adrenal 17 .77 RPM
bodymap2_skeletal_muscle 5 .95 RPM
bodymap2_thyroid 6 .10 RPM
bodymap2_prostate 16 .49 RPM
bodymap2_colon 13 .75 RPM
bodymap2_testis 10 .39 RPM
bodymap2_brain 5 .06 RPM
bodymap2_heart 5 .80 RPM
bodymap2_white_blood_cells 69 .30 RPM
bodymap2_lymph_node 25 .95 RPM
bodymap2_ovary 10 .68 RPM
bodymap2_kidney 11 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Homo sapiens ENSG00000132475 within_species_paralog 11 retrogenes
retro_hsap_1212, retro_hsap_1552, retro_hsap_2180, retro_hsap_24, retro_hsap_2971, retro_hsap_3231, retro_hsap_3294, retro_hsap_3299, retro_hsap_389, retro_hsap_4236, retro_hsap_911,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 ortholog_one2one 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
retro_pvam_218, retro_pvam_52,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2825 89.34 89.71
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2. retro_hsap_2889 86.49 80.88
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3. retro_hsap_3102 97.79 100.00
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4. retro_hsap_3214 62.07 83.82
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5. retro_hsap_4800 86.76 100.00
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Download FASTA sequences of all ENSG00000163041 retrocopies