RetrogeneDB ID: retro_mputfur_389

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896906.1:18227239..18227566(-)
• Located in intron of: ENSMPUG00000005680

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: H3F3B
• Ensembl ID: ENSMPUG00000004555
• Aliases: None
• Description: H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765]

Sequence

>retro_mputfur_389
AAACAGACCACCCACAAATCCACGGCTGGGAAGGGGCCTTGCAAAGCCCACAGGAGAAGCACCCTTTCTACCGCCAGGGT
GAAAACACCCCATGGCCACAGGCCCAGGCCCACTGCACTTCTGGAGGCCTGTGGTTATCAGAAATCCAATGAGCCTGAGC
TTTTTATCCAGAAGCTGCCTTTCCAGAGGCTGGTGAGGGAGACTGCCCAGGATTTCAAAACCCATCTGAGATTTTAGGGT
GCCGCCACCGGCTCACATCTGGAGACCAGGGAAACATGGCCGGTGGGCTTCTTTGAAGATCCTAACCTGGGAGCCATCCA
CGCTGAG

Alignment

ORF - retro_mputfur_389 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.05 %
• Parental protein coverage: 78.68 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE--LLIRKLPFQRLVREIAQ
          K.T..K........KA.R.S..ST..VK.PH..RP...AL.E...YQKS.E..L.I.KLPFQRLVRE.AQ
Retrocopy KQTTHKSTAGKGPCKAHRRSTLSTARVKTPHGHRPRPTALLEACGYQKSNEPELFIQKLPFQRLVRETAQ

Parental  DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAK
          DFKT.LRF..AA.G...E..E...VG.FED.NL.AIHA.
Retrocopy DFKTHLRF*GAATGSHLETRETWPVGFFEDPNLGAIHAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_389 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_389 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 44 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012702	10 retrocopies	retro_cjac_145, retro_cjac_198, retro_cjac_201, retro_cjac_224, retro_cjac_235, retro_cjac_238, retro_cjac_307, retro_cjac_334, retro_cjac_366, retro_cjac_68,
Dasypus novemcinctus	ENSDNOG00000024843	2 retrocopies	retro_dnov_1624, retro_dnov_775,
Equus caballus	ENSECAG00000006904	1 retrocopy	retro_ecab_916,
Equus caballus	ENSECAG00000016948	1 retrocopy	retro_ecab_266,
Homo sapiens	ENSG00000132475	11 retrocopies	retro_hsap_1212, retro_hsap_1552, retro_hsap_2180, retro_hsap_24, retro_hsap_2971, retro_hsap_3231, retro_hsap_3294, retro_hsap_3299, retro_hsap_389, retro_hsap_4236, retro_hsap_911,
Latimeria chalumnae	ENSLACG00000004118	1 retrocopy	retro_lcha_104,
Loxodonta africana	ENSLAFG00000008083	3 retrocopies	retro_lafr_837, retro_lafr_959, retro_lafr_99,
Microcebus murinus	ENSMICG00000002139	2 retrocopies	retro_mmur_36, retro_mmur_371,
Mustela putorius furo	ENSMPUG00000004555	4 retrocopies	retro_mputfur_389 , retro_mputfur_82, retro_mputfur_99, retro_mputfur_990,
Mustela putorius furo	ENSMPUG00000013811	3 retrocopies	retro_mputfur_1159, retro_mputfur_787, retro_mputfur_881,
Oreochromis niloticus	ENSONIG00000019975	5 retrocopies	retro_onil_41, retro_onil_46, retro_onil_56, retro_onil_60, retro_onil_63,
Pongo abelii	ENSPPYG00000008636	1 retrocopy	retro_pabe_2662,