Parental gene:

H3F3B, ENSGGOG00000022928

Aliases:None
Description:H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765]
Organism:Gorilla (Gorilla gorilla)
Coordinates:5:7469884..7472736(+)


>ENSGGOG00000022928
ATGGCCCGAACCAAGCAGACTGCTCGTAAATCCACTGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGAAAGCCGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGTC
GTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCGCAGGATTTCAAA
ACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGCAGGAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGA
TACCAACCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 161 .99 RPM
SRP007412_cerebellum 335 .67 RPM
SRP007412_heart 65 .20 RPM
SRP007412_kidney 187 .19 RPM
SRP007412_liver 175 .20 RPM
SRP007412_testis 607 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009661 ortholog_one2one 10 retrogenes
retro_chof_1580, retro_chof_1635, retro_chof_1911, retro_chof_2281, retro_chof_2294, retro_chof_2343, retro_chof_2546, retro_chof_454, retro_chof_517, retro_chof_530,
Gorilla gorilla ENSGGOG00000022526 within_species_paralog 11 retrogenes
retro_ggor_1179, retro_ggor_1809, retro_ggor_1837, retro_ggor_1919, retro_ggor_2003, retro_ggor_2837, retro_ggor_2956, retro_ggor_3082, retro_ggor_393, retro_ggor_736, retro_ggor_944,
Loxodonta africana ENSLAFG00000021624 ortholog_one2one 4 retrogenes
retro_lafr_172, retro_lafr_410, retro_lafr_546, retro_lafr_832,
Myotis lucifugus ENSMLUG00000015447 possible_ortholog 10 retrogenes
retro_mluc_146, retro_mluc_1571, retro_mluc_2286, retro_mluc_2344, retro_mluc_2364, retro_mluc_246, retro_mluc_2468, retro_mluc_2500, retro_mluc_392, retro_mluc_613,
Oryctolagus cuniculus ENSOCUG00000024644 ortholog_one2one 2 retrogenes
retro_ocun_185, retro_ocun_217,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Ictidomys tridecemlineatus ENSSTOG00000024226 possible_ortholog 8 retrogenes
retro_itri_315, retro_itri_449, retro_itri_465, retro_itri_505, retro_itri_649, retro_itri_695, retro_itri_764, retro_itri_771,
Tupaia belangeri ENSTBEG00000006177 possible_ortholog 13 retrogenes
retro_tbel_110, retro_tbel_1274, retro_tbel_15, retro_tbel_170, retro_tbel_2335, retro_tbel_3341, retro_tbel_3342, retro_tbel_3820, retro_tbel_391, retro_tbel_487, retro_tbel_592, retro_tbel_783, retro_tbel_978,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_1964 88.52 89.71
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2. retro_ggor_2181 63.93 88.24
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3. retro_ggor_2198 84.89 100.00
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4. retro_ggor_2357 66.36 80.15
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5. retro_ggor_2805 63.44 65.44
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6. retro_ggor_2905 92.59 99.26
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7. retro_ggor_2987 85.29 100.00
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Download FASTA sequences of all ENSGGOG00000022928 retrocopies