RetrogeneDB ID: | retro_ggor_2003 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:180873170..180873497(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSGGOG00000022526 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 86.36 % |
Parental protein coverage: | 80.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA |
RKSAPSTG.VKKPH.YRPGTVAL.EIRRYQKSTELLIRKLPFQ.LVREIAQDFKTD..FQSAA.GALQEA | |
Retrocopy | RKSAPSTGRVKKPHHYRPGTVAL-EIRRYQKSTELLIRKLPFQCLVREIAQDFKTDMHFQSAAVGALQEA |
Parental | SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
SEAYLVGLFEDTNLCAIHA..VTIMPKDIQL...I..E.A | |
Retrocopy | SEAYLVGLFEDTNLCAIHAEHVTIMPKDIQLTHHIPEECA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 14 .34 RPM |
SRP007412_cerebellum | 0 .04 RPM | 28 .45 RPM |
SRP007412_heart | 0 .00 RPM | 13 .41 RPM |
SRP007412_kidney | 0 .00 RPM | 62 .76 RPM |
SRP007412_liver | 0 .00 RPM | 55 .89 RPM |
SRP007412_testis | 0 .10 RPM | 47 .76 RPM |