RetrogeneDB ID: | retro_ggor_736 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:86820997..86821348(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSGGOG00000022526 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 66.12 % |
Parental protein coverage: | 86.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | STGG-KAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL-PFQRLVREIAQD |
STGG.K.P...L....A..SAPSTGGVKKPH...P.TV.L.EIR.Y.K..ELLI.KL..F..LV..I.QD | |
Retrocopy | STGGVKKPHRMLQMSLA--SAPSTGGVKKPH*DKPYTVVLHEIRYYEKPIELLIQKL<SF*HLV*KISQD |
Parental | FKTDLRFQSAAIGALQEASE-AYLVGLFEDTNLCAIHAKRVTIMPKDIQLA |
FK..L.FQSAAIGALQEASE..YLV.LFE.T.LC.I.AK.VTIMPK.IQLA | |
Retrocopy | FKIGLGFQSAAIGALQEASE>TYLVNLFEGTILCVIYAKSVTIMPKGIQLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .45 RPM |
SRP007412_heart | 0 .00 RPM | 13 .41 RPM |
SRP007412_kidney | 0 .00 RPM | 62 .76 RPM |
SRP007412_liver | 0 .00 RPM | 55 .89 RPM |
SRP007412_testis | 0 .00 RPM | 47 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_911 |
Pan troglodytes | retro_ptro_631 |