RetrogeneDB ID: | retro_ggor_944 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:54248114..54248523(+) | ||
Located in intron of: | ENSGGOG00000004058 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000009197 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSGGOG00000022526 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 96.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPG-TVALREIRRYQKSTELLIRKLPFQ |
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTG.VKKPHRYRPG.TV.LREIRRYQKSTELLIRKLPFQ | |
Retrocopy | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGRVKKPHRYRPG>TVVLREIRRYQKSTELLIRKLPFQ |
Parental | RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
RLVREIAQDFKT.LRFQ.AAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | RLVREIAQDFKTHLRFQNAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .34 RPM |
SRP007412_cerebellum | 0 .08 RPM | 28 .45 RPM |
SRP007412_heart | 0 .00 RPM | 13 .41 RPM |
SRP007412_kidney | 0 .04 RPM | 62 .76 RPM |
SRP007412_liver | 0 .03 RPM | 55 .89 RPM |
SRP007412_testis | 0 .31 RPM | 47 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1212 |
Pan troglodytes | retro_ptro_830 |