Parental gene:

HMGB1, ENSNLEG00000000720

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397329.1:3466212..3473946(-)


>ENSNLEG00000000720
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTCGGGAGGAGCA
TAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAGAAAGGAAAATTTGAAGATATGGCAAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACCTATATCCCT
CCCAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTCTTCCTGTTCTGCTC
TGAGTATCGCCCAAAAATCAAAGGAGAACATCCTGGCCTGTCCATTGGTGATGTTGCGAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCGAAGCTGAAGGAAAAATACGAAAAGGATATTGCT
GCATATCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAAGGAGTTGTCAAGGCTGAAAAAAGCAAGAAAAAGAAGGAAGA
GGAGGAAGATGAGGAAGATGAAGAGGATGAGGAGGAGGAGGAAGATGAAGAAGATGAAGATGAAGAAGAAGATGATGATG
ATGAATAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Equus caballus ENSECAG00000008439 ortholog_one2one 2 retrogenes
retro_ecab_101, retro_ecab_64,
Felis catus ENSFCAG00000000200 ortholog_one2one 10 retrogenes
retro_fcat_1046, retro_fcat_1271, retro_fcat_1306, retro_fcat_1330, retro_fcat_1759, retro_fcat_693, retro_fcat_728, retro_fcat_762, retro_fcat_770, retro_fcat_821,
Homo sapiens ENSG00000189403 ortholog_one2one 37 retrogenes
retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
retro_ggor_1057, retro_ggor_1212, retro_ggor_1421, retro_ggor_1596, retro_ggor_1637, retro_ggor_1662, retro_ggor_1735, retro_ggor_1777, retro_ggor_1856, retro_ggor_1951, retro_ggor_1977, retro_ggor_213, retro_ggor_2422, retro_ggor_2441, retro_ggor_2478, retro_ggor_259, retro_ggor_2897, retro_ggor_3013, retro_ggor_388, retro_ggor_448, retro_ggor_483, retro_ggor_753, retro_ggor_964,
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
retro_meug_1591, retro_meug_825,
Microcebus murinus ENSMICG00000007144 ortholog_one2one 7 retrogenes
retro_mmur_11, retro_mmur_1452, retro_mmur_154, retro_mmur_182, retro_mmur_40, retro_mmur_428, retro_mmur_664,
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
retro_mdom_1088, retro_mdom_1144, retro_mdom_1228, retro_mdom_1689, retro_mdom_1727, retro_mdom_1819, retro_mdom_2007, retro_mdom_2024, retro_mdom_3, retro_mdom_434, retro_mdom_548, retro_mdom_72, retro_mdom_760, retro_mdom_958,
Mus musculus ENSMUSG00000066551 ortholog_one2one 129 retrogenes
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG00000006662 other_paralog 3 retrogenes
retro_nleu_113, retro_nleu_517, retro_nleu_550,
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
retro_rnor_421,
Sorex araneus ENSSARG00000004470 ortholog_one2one 14 retrogenes
retro_sara_131, retro_sara_182, retro_sara_259, retro_sara_293, retro_sara_302, retro_sara_342, retro_sara_378, retro_sara_402, retro_sara_47, retro_sara_564, retro_sara_576, retro_sara_613, retro_sara_655, retro_sara_765,
Sus scrofa ENSSSCG00000009327 ortholog_one2one 3 retrogenes
retro_sscr_1222, retro_sscr_304, retro_sscr_649,
Tursiops truncatus ENSTTRG00000010327 ortholog_one2one 8 retrogenes
retro_ttru_102, retro_ttru_1143, retro_ttru_119, retro_ttru_1382, retro_ttru_256, retro_ttru_723, retro_ttru_757, retro_ttru_956,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_278 94.05 84.19
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2. retro_nleu_292 62.32 62.79
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3. retro_nleu_301 82.68 82.79
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4. retro_nleu_322 73.26 84.65
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5. retro_nleu_345 92.43 85.58
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6. retro_nleu_393 84.55 56.74
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7. retro_nleu_520 72.57 80.00
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8. retro_nleu_576 69.77 59.53
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9. retro_nleu_602 72.68 84.19
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10. retro_nleu_875 80.00 62.33
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11. retro_nleu_885 91.18 79.07
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12. retro_nleu_968 64.71 54.88
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13. retro_nleu_984 68.99 71.63
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14. retro_nleu_1148 72.17 52.56
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15. retro_nleu_1165 78.39 91.16
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16. retro_nleu_1241 63.95 79.07
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17. retro_nleu_1271 84.39 79.07
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18. retro_nleu_1393 75.56 82.79
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19. retro_nleu_1461 77.99 73.95
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20. retro_nleu_1633 77.84 81.40
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21. retro_nleu_1746 69.47 60.93
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22. retro_nleu_1932 73.14 80.00
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23. retro_nleu_2160 70.18 79.07
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24. retro_nleu_2210 86.01 65.12
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25. retro_nleu_2377 70.77 59.53
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26. retro_nleu_2512 88.36 67.44
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27. retro_nleu_2517 83.53 79.07
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28. retro_nleu_2637 73.23 57.21
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29. retro_nleu_2681 55.12 92.56
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30. retro_nleu_2708 75.69 83.72
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31. retro_nleu_2752 85.25 84.19
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32. retro_nleu_2798 86.30 67.91
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33. retro_nleu_2859 52.82 62.79
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Download FASTA sequences of all ENSNLEG00000000720 retrocopies