Parental gene:

HMGB1, ENSECAG00000008439

Aliases:None
Description:High mobility group protein B1 [Source:UniProtKB/Swiss-Prot;Acc:Q08IE6]
Organism:Horse (Equus caballus)
Coordinates:17:9783952..9788942(-)


>ENSECAG00000008439
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCA
CAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACTATGTCTG
CTAAAGAGAAGGGAAAATTTGAAGACATGGCAAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCT
CCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCTAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTC
TGAGTATCGCCCCAAAATCAAAGGAGAGCATCCTGGCCTATCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCTAAGCTGAAGGAGAAATACGAAAAGGATATTGCT
GCATACCGAGCTAAAGGAAAACCTGATGCAGCGAAAAAGGGAGTTGTCAAGGCTGAAAAAAGCAAGAAAAAGAAGGAAGA
GGAGGAAGATGAGGAAGACGAAGAGGATGAGGAGGAGGAGGAAGATGAAGAAGATGAAGATGAAGAAGAAGATGATGATG
ATGAATAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 29 .46 RPM
SRP021940_cerebellum 24 .41 RPM
SRP021940_embryo 114 .18 RPM
SRP021940_placental_villous 47 .25 RPM
SRP021940_synovial_membrane 28 .69 RPM
SRP021940_testis 20 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
Choloepus hoffmanni ENSCHOG00000002423 possible_ortholog 16 retrogenes
Equus caballus ENSECAG00000020596 other_paralog 1 retrogene
Felis catus ENSFCAG00000000200 ortholog_one2one 10 retrogenes
Homo sapiens ENSG00000189403 ortholog_one2many 37 retrogenes
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
Loxodonta africana ENSLAFG00000000269 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
Microcebus murinus ENSMICG00000007144 ortholog_one2one 7 retrogenes
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
Mus musculus ENSMUSG00000066551 ortholog_one2one 129 retrogenes
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG00000000720 ortholog_one2one 33 retrogenes
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
Sorex araneus ENSSARG00000004470 ortholog_one2many 14 retrogenes
Sarcophilus harrisii ENSSHAG00000014034 possible_ortholog 2 retrogenes
Sus scrofa ENSSSCG00000009327 ortholog_one2one 3 retrogenes
Tursiops truncatus ENSTTRG00000010327 ortholog_one2one 8 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_64 98.58 98.14
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ecab_101 95.81 100.00
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSECAG00000008439 retrocopies