RetrogeneDB ID: | retro_mmus_2754 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:82242173..82242734(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb1 | ||
Ensembl ID: | ENSMUSG00000066551 | ||
Aliases: | Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30 | ||
Description: | high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113] |
Percent Identity: | 66.49 % |
Parental protein coverage: | 84.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA-KEKGKFEDMAKADKA |
MGK.D..KPRGKMSSYAFF.QT.REE.K.KH.DASVN..EFS.KCSERWKTM.A.K..G......K.... | |
Retrocopy | MGKEDLNKPRGKMSSYAFFSQTFREEPKEKHQDASVNSLEFSEKCSERWKTMPA>KKRGNLKIWQKLTRL |
Parental | RYEREMKTYIP---PKGETKK--KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN |
......K...P....KG..K.....KDP.APK.PPSAFFLFCSEY.PKIKG.HP.LS.GDVAKKLGEMWN | |
Retrocopy | AVKGK*KPTTPHAAAKGRPKRSSRTKDPSAPKMPPSAFFLFCSEYCPKIKGKHPSLSVGDVAKKLGEMWN |
Parental | NTAADDKQPYEKKA-AKLKEKYEKDIAAY-RAKGKPDAAKK-GVVKAEKSK |
NT.ADDKQPY...A..KLKEKY.KDIAAY...KGKP.A.KK.GVVKAEKSK | |
Retrocopy | NTTADDKQPYKEEA<SKLKEKYKKDIAAY<QPKGKPHAVKK>GVVKAEKSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 36 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .49 RPM |
SRP007412_heart | 0 .00 RPM | 35 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 43 .37 RPM |
SRP007412_liver | 0 .00 RPM | 39 .30 RPM |
SRP007412_testis | 0 .09 RPM | 12 .44 RPM |