RetrogeneDB ID: | retro_mmus_1140 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:101038712..101039246(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000096722 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb1 | ||
Ensembl ID: | ENSMUSG00000066551 | ||
Aliases: | Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30 | ||
Description: | high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113] |
Percent Identity: | 97.19 % |
Parental protein coverage: | 82.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKK.RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA.ADKAR | |
Retrocopy | MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAIADKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YEREMKTYIPPK.ETKKKFKDPNAPKRPPSAFFLFCS.YRPKIKGEHPGLSIGDVAKK.GEMWNNTAADD | |
Retrocopy | YEREMKTYIPPKRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGLSIGDVAKKRGEMWNNTAADD |
Parental | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA |
KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA | |
Retrocopy | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 36 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .49 RPM |
SRP007412_heart | 0 .00 RPM | 35 .74 RPM |
SRP007412_kidney | 0 .04 RPM | 43 .37 RPM |
SRP007412_liver | 0 .03 RPM | 39 .30 RPM |
SRP007412_testis | 0 .05 RPM | 12 .44 RPM |