RetrogeneDB ID: | retro_mmus_3175 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:11961109..11961515(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb1 | ||
Ensembl ID: | ENSMUSG00000066551 | ||
Aliases: | Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30 | ||
Description: | high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113] |
Percent Identity: | 58.87 % |
Parental protein coverage: | 63.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MGKGDPKKPRGKMSSYA-FFVQTCREEHKKKHP-DASVNFSEFSKKCSERWKTMSAK-EKGKFEDMAKAD |
MGK.DPKK..GK.SSY...FVQ.C.EEHKK.H....SV..SEF.K..SERWKT.S.K..KGKFE.MAKAD | |
Retrocopy | MGKRDPKKWTGKVSSYI<IFVQSCQEEHKKEHG<QTSVSSSEFCKTFSERWKTTSVK<RKGKFEGMAKAD |
Parental | KARYEREMKTYIPPKGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT |
KA.YER......PPKGETK.K..DPN.P..R..SAFFLFCSE..PK...E............LG.MWN.T | |
Retrocopy | KAHYERN-ENLQPPKGETKRKNEDPNVP>RRRRSAFFLFCSEDCPKKSEENILSGPPMMLQRLGAMWNST |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .49 RPM |
SRP007412_heart | 0 .00 RPM | 35 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 43 .37 RPM |
SRP007412_liver | 0 .00 RPM | 39 .30 RPM |
SRP007412_testis | 0 .00 RPM | 12 .44 RPM |