RetrogeneDB ID:

retro_fcat_728

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B2:110760318..110760863(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000000200
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_728
CTGGGCAAAGGGGATCCTAAGAAACCGAGAGGCAAAATGTCATCGTATTCATTCTTTGTGCTAGCTTGCCGAGAGGAGCA
CAAGAAGCACCCAGATGCTTCAGTCAGCTTCTCAGAGTTTTCTCGTAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTA
AAGAGAAAGGAAAACTTGGAGACATGGCAAAGGTGGAAAAGGCCCTTTATGAAAGAGAAATGAAAGCTAATATCGCCGCT
AAAGGGGAAACAAAAAAGAAGTTGCAGGATTCCAATGCACCCAAGGGTCCTCCTTTGGCCTTTTTCTTGTTTTGTTTTGA
GTATTGCTCCCAAATCAAAGAAGAACATCCCAGCCTATCCATTGGTAATGTTGCAAAGAAACTGGGAGAGACATGGAATA
ATACTGCCACAGATGACAAGCAGCCCCACTAAAAGAAGGCTGCTAAACTGAAGGAAAAATATGAAAAGGATATTGCTGCA
TACTGGACTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTGTCAAGCTGAAAAAAGCAAGAAAA

ORF - retro_fcat_728 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.38 %
Parental protein coverage: 85.19 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR
.GKGDPKKPRGKMSSY.FFV..CREEHKK.HPDASV.FSEFS.KCSERWKTMSAKEKGK..DMAK..KA.
RetrocopyLGKGDPKKPRGKMSSYSFFVLACREEHKK-HPDASVSFSEFSRKCSERWKTMSAKEKGKLGDMAKVEKAL
ParentalYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD
YEREMK..I..KGETKKK..D.NAPK.PP.AFFLFC.EY...IK.EHP.LSIG.VAKKLGE.WNNTA.DD
RetrocopyYEREMKANIAAKGETKKKLQDSNAPKGPPLAFFLFCFEYCSQIKEEHPSLSIGNVAKKLGETWNNTATDD
ParentalKQPYEKKAAKLKEKYEKKDIAAYRAKGKPDAAKKGV-VKAEKSKK
KQP..KKAAKLKEKYE.KDIAAY..KGKPDAAKKGV.VK..K..K
RetrocopyKQPH*KKAAKLKEKYE-KDIAAYWTKGKPDAAKKGV<VKLKKARK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 78 .85 RPM
SRP017611_kidney 0 .00 RPM 77 .29 RPM
SRP017611_liver 0 .00 RPM 31 .03 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_728 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_728 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 327 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG0000000659713 retrocopies
Choloepus hoffmanni ENSCHOG0000000242316 retrocopies
Equus caballus ENSECAG000000084392 retrocopies
Felis catus ENSFCAG00000000200 10 retrocopies
Felis catus ENSFCAG000000042182 retrocopies
Felis catus ENSFCAG000000246244 retrocopies
Homo sapiens ENSG0000018940337 retrocopies
Gorilla gorilla ENSGGOG0000002676423 retrocopies
Loxodonta africana ENSLAFG000000002694 retrocopies
Macropus eugenii ENSMEUG000000013802 retrocopies
Microcebus murinus ENSMICG000000071447 retrocopies
Macaca mulatta ENSMMUG000000233993 retrocopies
Monodelphis domestica ENSMODG0000000923814 retrocopies
Mus musculus ENSMUSG00000066551129 retrocopies
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG0000000072033 retrocopies
Rattus norvegicus ENSRNOG000000298131 retrocopy
Sorex araneus ENSSARG0000000447014 retrocopies
Sarcophilus harrisii ENSSHAG000000140342 retrocopies
Sus scrofa ENSSSCG000000093273 retrocopies
Tursiops truncatus ENSTTRG000000103278 retrocopies



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