RetrogeneDB ID: | retro_fcat_1306 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:135613303..135613821(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.45 % |
Parental protein coverage: | 79.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MG.GDPKKPRGKMS.YAFFVQTC.EE.KKKHP.ASV.FSEFSK.CSERWKTMSAK..GKFEDMAK.DKA. | |
Retrocopy | MGRGDPKKPRGKMS*YAFFVQTC*EESKKKHPEASVGFSEFSKECSERWKTMSAKKTGKFEDMAKVDKAC |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYR--PKIKG-EHPGLSIGDVAKKLG-EMWNNT |
YEREMKTYIP.KGETKKKFKDPNAPK.PP.A.F.FCS..R...K.KG..HP.LSIGDVAKK.G.E.W... | |
Retrocopy | YEREMKTYIPAKGETKKKFKDPNAPKMPPLALFSFCSVLRIAQKSKG<VHPSLSIGDVAKKPG>ETWYHS |
Parental | AADDKQPYEKKAAKLKEKYEKKDIAAYRA-KGKPDAA |
.A.D.Q..EKKAA..K...E.KD...YR..KGKPDAA | |
Retrocopy | HAYDTQSHEKKAAEPKDRQE-KDVVPYRG<KGKPDAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .29 RPM |
SRP017611_liver | 0 .00 RPM | 31 .03 RPM |