RetrogeneDB ID:

retro_mmur_664

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_4537:578219..578787(+)
Located in intron of:ENSMICG00000004593
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMICG00000007144
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmur_664
GGGCAAAAAGATCCTAATAATCCGAGAGGCAAAATGTCATCATACACATTTTTTATGCAAACTAGTCGAGAGGAGCACAA
GAAGCAGCACCCAGATGCTTGAGTCAACTCTAAGATCTCTAAGAAGCGCTCAGAGAGGTGAAGAAAAGACTGTGTGTCAA
AGAGGAAGGAAAATTTGAAGACATGTCAAAGGCTGATAAGGCCTGTTAGGAAAGAGAAAAGAAAACCTGTGTCCCTCCTA
AAGGGGAAACAGAAAGCAGGTTCAAAGATCCCAATGCACCCAAGAGGCCTCTTCCAGCCTTTCTTGTTCTGTTCTGAGTG
TCGCCCAGAAATGCGAGCAGAACACCCCGTCCACGCATTGGTGATGTTGCAAAGGCACCGAGAGAGTGTGGAGTGACACG
GGCACAGGTGACAAGAAGCTGTATGGAAAGAAGGCTGTGGAGCTGAAGGAAAACTGCAAGAAGGATGTCGCTGCACAGCG
AGCTAAAGCTAAAGCCTGGGGCAGCAAAAAAAAGGGAGTCATTGAGGCTGAAAAACAGCAAGACAAGGGAGAGGAGGAAG
ATGATGAA

ORF - retro_mmur_664 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.92 %
Parental protein coverage: 88.37 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCS-ERWKTMSAKEKGKFEDMAKADKAR
G..DP..PRGKMSSY.FF.QT.REEHKK.HPDA.VN.....K....E..K....KE.GKFEDM.KADKA.
RetrocopyGQKDPNNPRGKMSSYTFFMQTSREEHKKQHPDA*VNSKISKKRSE<EVKKRLCVKEEGKFEDMSKADKAC
ParentalYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGE-MWNNTAAD
.ERE.KT..PPKGET...FKDPNAPKRP..A.FL......P......P...IGDVAK...E..W..T...
Retrocopy*EREKKTCVPPKGETESRFKDPNAPKRPLPA-FLVLF*VSPRNASRTPRPRIGDVAKAPRE<VWSDTGTG
ParentalDKQPYEKKAAKLKEKYEKDIAAYRAKGKP-DAAKKGVVKAEKSKKKKEEEEDE
DK..Y.KKA..LKE...KD.AA.RAK.K.......GV..AEK...K.EEE.DE
RetrocopyDKKLYGKKAVELKENCKKDVAAQRAKAKAWGSXXXGVIEAEKQQDKGEEEDDE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_664 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_664 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 326 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG0000000659713 retrocopies
Choloepus hoffmanni ENSCHOG0000000242316 retrocopies
Equus caballus ENSECAG000000084392 retrocopies
Felis catus ENSFCAG0000000020010 retrocopies
Homo sapiens ENSG0000018940337 retrocopies
Gorilla gorilla ENSGGOG0000002676423 retrocopies
Loxodonta africana ENSLAFG000000002694 retrocopies
Macropus eugenii ENSMEUG000000013802 retrocopies
Microcebus murinus ENSMICG000000005731 retrocopy
Microcebus murinus ENSMICG00000007144 7 retrocopies
Microcebus murinus ENSMICG000000156684 retrocopies
Macaca mulatta ENSMMUG000000233993 retrocopies
Monodelphis domestica ENSMODG0000000923814 retrocopies
Mus musculus ENSMUSG00000066551129 retrocopies
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG0000000072033 retrocopies
Rattus norvegicus ENSRNOG000000298131 retrocopy
Sorex araneus ENSSARG0000000447014 retrocopies
Sarcophilus harrisii ENSSHAG000000140342 retrocopies
Sus scrofa ENSSSCG000000093273 retrocopies
Tursiops truncatus ENSTTRG000000103278 retrocopies



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