RetrogeneDB ID: | retro_mmus_2194 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:101260916..101261381(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081569 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb1 | ||
Ensembl ID: | ENSMUSG00000066551 | ||
Aliases: | Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30 | ||
Description: | high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 73.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MGKGDPKKPRGK-MSSYA-FFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA-KA |
..KG.P.K.R.K.MSSYA..FVQTC.E.H..KKH........EFSKK.SER....SA.EK.K.ED...KA | |
Retrocopy | LSKGEP-K*RDK<MSSYA<IFVQTCQEKHR<KKHRVPCQHLREFSKK-SERLGPVSAEEKQKHEDIG<KA |
Parental | DKARYEREMKTYIPP-KGETKKKFKDPNAPKRPP-SAFFLFCSE--YRPKIKGEHPGLSIGDVAKKLGEM |
D..RY.REMKTYIPP.K.....K...P......P.S.FFL.CSE....P.IK..HPGLS.GD.AKK.GE. | |
Retrocopy | DETRYKREMKTYIPPPKRGRPRKV*GPQCTQEVP>SEFFLLCSE*YPPPQIKKDHPGLSTGDAAKKPGEL |
Parental | WNNTAADDKQPYEKKAAKLKEKYEK |
W...AA.D.QP.E.KAA.LKE...K | |
Retrocopy | W-GSAAEDRQPCE-KAAELKENCRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .49 RPM |
SRP007412_heart | 0 .00 RPM | 35 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 43 .37 RPM |
SRP007412_liver | 0 .00 RPM | 39 .30 RPM |
SRP007412_testis | 0 .00 RPM | 12 .44 RPM |