RetrogeneDB ID: | retro_nleu_345 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397263.1:14275746..14276297(-) | ||
Located in intron of: | ENSNLEG00000005050 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSNLEG00000000720 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.43 % |
Parental protein coverage: | 85.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKKPRGKMSSYAFFVQTC.EE.KKKHPDASVNFSEFSKKCSERW..MSAKEKGKFEDMAK.DKA. | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTCWEECKKKHPDASVNFSEFSKKCSERWRAMSAKEKGKFEDMAKVDKAH |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YEREMKTYIPPK.ETKKKF.D.N.PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD | |
Retrocopy | YEREMKTYIPPKEETKKKFEDSNEPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
Parental | KQPYEKKAAKLK-EKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK |
KQPYEKK.AKLK.EKYEKD.A.YRAKGKPDAAKKGVVKAEKSKKK | |
Retrocopy | KQPYEKKPAKLK<EKYEKDTATYRAKGKPDAAKKGVVKAEKSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |