Parental gene:

HMGB1, ENSTTRG00000010327

Aliases:None
Description:high mobility group box 1 [Source:HGNC Symbol;Acc:4983]
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_103988:119410..121794(+)


>ENSTTRG00000010327
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCA
CAAGAAGAAGCACCCAGATGCTTCTGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAGAAAGGAAAGTTTGAAGACATGGCAAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCT
CCTAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTC
TGAGTATCGTCCAAAAATCAAAGGAGAACATCCTGGCCTATCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCTTATGAGAAGAAGGCTGCTAAACTGAAGGAAAAGTACGAAAAGGATATTGCT
GCATACCGAGCTAAAGGGAAGCCTGATGCAGCAAAAAAGGGAGTCGTCAAGGCTGAAAAAAGCAAGAAAAAGAAGGAAGA
GGAGGAAGATGAGGAAGATGAAGAGGATGAGGAGGAGGAGGAGGATGAAGAGGATGAAGAGGAAGAAGAAGATGATGATG
ATGAATAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
Equus caballus ENSECAG00000008439 ortholog_one2one 2 retrogenes
Felis catus ENSFCAG00000000200 ortholog_one2one 10 retrogenes
Homo sapiens ENSG00000189403 ortholog_one2one 37 retrogenes
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
Microcebus murinus ENSMICG00000007144 ortholog_one2one 7 retrogenes
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
Mus musculus ENSMUSG00000066551 ortholog_one2one 129 retrogenes
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG00000000720 ortholog_one2one 33 retrogenes
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
Sorex araneus ENSSARG00000004470 ortholog_one2one 14 retrogenes
Sus scrofa ENSSSCG00000009327 ortholog_one2one 3 retrogenes
Tursiops truncatus ENSTTRG00000000205 other_paralog 2 retrogenes
Tursiops truncatus ENSTTRG00000015650 other_paralog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_102 89.29 90.70
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2. retro_ttru_119 81.67 82.79
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3. retro_ttru_256 50.31 73.02
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4. retro_ttru_723 67.77 54.88
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5. retro_ttru_757 97.75 82.33
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6. retro_ttru_956 81.82 74.42
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7. retro_ttru_1143 94.32 81.86
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8. retro_ttru_1382 85.71 81.40
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Download FASTA sequences of all ENSTTRG00000010327 retrocopies