RetrogeneDB ID: | retro_ecab_101 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:115229096..115229735(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000005186 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSECAG00000008439 | ||
Aliases: | None | ||
Description: | High mobility group protein B1 [Source:UniProtKB/Swiss-Prot;Acc:Q08IE6] |
Percent Identity: | 95.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKG.PKKPRG.MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR | |
Retrocopy | MGKGEPKKPRGRMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD | |
Retrocopy | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
Parental | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEE |
KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK.KKKKE.EEDEEDEEDEEEEE.E...DEEE | |
Retrocopy | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKIKKKKEAEEDEEDEEDEEEEEVE---DEEE |
Parental | DDDDE |
D.DDE | |
Retrocopy | DYDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 1 .18 RPM | 29 .46 RPM |
SRP021940_cerebellum | 0 .00 RPM | 24 .41 RPM |
SRP021940_embryo | 0 .15 RPM | 114 .18 RPM |
SRP021940_placental_villous | 0 .24 RPM | 47 .25 RPM |
SRP021940_synovial_membrane | 0 .82 RPM | 28 .69 RPM |
SRP021940_testis | 0 .00 RPM | 20 .46 RPM |