RetrogeneDB ID: | retro_fcat_1330 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:37651731..37652311(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.4 % |
Parental protein coverage: | 92.13 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKG.PKKP.GKMSSY.FFVQT..EE....HPD.SVNFSEFSK.CSE..KTMSA.EKG.FEDMAKADKA. | |
Retrocopy | MGKGNPKKPKGKMSSYTFFVQTFQEE----HPDVSVNFSEFSKECSES*KTMSAQEKGNFEDMAKADKAH |
Parental | YER-EMKTYIPPKGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA |
YER..MKTY....G..K.K..DPNAP....P.AFFLF.S..RPKIKG...G.SIGDVAKK.GEMW.N..A | |
Retrocopy | YER>DMKTYPT*RGNKKQKS*DPNAP<QCTPLAFFLFSSA*RPKIKGGRSGFSIGDVAKKMGEMW-NNSA |
Parental | DDKQP-YEKKAAKLKEKYEKKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEE |
.D......KKAA.LKEKYEK..IAA..A.GKPDA..................E.....ED.E | |
Retrocopy | TDDKQ>LTKKAAELKEKYEK-GIAAFGAEGKPDAXXXXXXXXXXXXXXRKRKEKK*EDEDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 77 .29 RPM |
SRP017611_liver | 0 .00 RPM | 31 .03 RPM |