RetrogeneDB ID: | retro_amel_887 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192712.1:1272582..1273012(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSAMEG00000011270 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 71.72 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPCVTSDGSKTRKRRFNAPSHVRRKIMSSPLSEELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKF....TS...K..K..FNAPSH..RKIM.S.L..ELRQKYNVRS.PI.KDD.VQ.V.GHYKGQQ.GK. | |
Retrocopy | MKFSLFMTSARRKKHKSHFNAPSHISRKIMLSLLFKELRQKYNVRSVPI*KDD-VQAV*GHYKGQQMGKL |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKK-ILERKAKSRQFGKEKGKYKEEL |
VQVYRKKY.IYIE.V.REKA.GTTVHVGIHP.K.VITRLKL.KD..K.IL..K.KS.Q.GKEKGKYKEE. | |
Retrocopy | VQVYRKKYAIYIEQVEREKADGTTVHVGIHPNKIVITRLKLGKDHTK>ILKCKGKSHQVGKEKGKYKEET |
Parental | IEKMQ |
IE.MQ | |
Retrocopy | IEYMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |