RetrogeneDB ID: | retro_tsyr_759 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_191944:556..904(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSTSYG00000001655 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 81.03 % |
Parental protein coverage: | 97.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MWSPLCKELRQMYNVRSMTFGKEEEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGI |
...PL.KELR..Y.VRSM...K...VQVVR.HYK.QQIGKVVQVYRKKYVIYIE.VQREKANGTTVHV.I | |
Retrocopy | LYLPLSKELR*KYSVRSMPIRKGDDVQVVRRHYKDQQIGKVVQVYRKKYVIYIEWVQREKANGTTVHVDI |
Parental | HPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE |
H.SKVVITRLKLDKD.KKILERKAKS.QVGKEK.KYKEE.IEKMQE | |
Retrocopy | HHSKVVITRLKLDKDGKKILERKAKSHQVGKEKSKYKEETIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011270 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002289 | 35 retrocopies |
retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
|
Latimeria chalumnae | ENSLACG00000007599 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009799 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001483 | 17 retrocopies | |
Tarsius syrichta | ENSTSYG00000001655 | 2 retrocopies |
retro_tsyr_1805, retro_tsyr_759 ,
|