RetrogeneDB ID: | retro_amel_560 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192501.1:1878646..1879076(-) | ||
Located in intron of: | ENSAMEG00000002662 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSAMEG00000011270 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 72.41 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPCVTSDGSKTRKRRFNAPSHVRRKIMSSPLSEELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNP.VTSD.SK.RKR.FNAPSH..RKI.SS.L..ELRQKYN..S.PI.KDDE..VV.GHYKGQQI.K. | |
Retrocopy | MKFNPFVTSDQSKNRKRHFNAPSHIWRKITSSSLCKELRQKYNDQSVPIQKDDEIEVVLGHYKGQQISKA |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ-FGKEKGKYKEEL |
VQVY.K...IY....Q..K.NGTT.HVGIHPSKVVI.RLKLDKD.KK.LERK.KS.Q..GK.KGKYKEE. | |
Retrocopy | VQVYGKE-SIYTK*KQ*AKVNGTTAHVGIHPSKVVISRLKLDKDCKKVLERKTKSHQ>LGKTKGKYKEET |
Parental | IEKMQ |
IEKMQ | |
Retrocopy | IEKMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |