RetrogeneDB ID: | retro_btau_910 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 20:2985751..2986486(-) | ||
Located in intron of: | ENSBTAG00000024801 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000034824 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSBTAG00000000236 | ||
Aliases: | None | ||
Description: | 14-3-3 protein zeta/delta [Source:UniProtKB/Swiss-Prot;Acc:P63103] |
Percent Identity: | 99.59 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNE.RNLLSVAYKNVVGARRSSWRVVSSIEQKTE | |
Retrocopy | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEDRNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG | |
Retrocopy | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
Parental | IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES | |
Retrocopy | IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
Parental | YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN | |
Retrocopy | YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 1 .44 RPM |
ERP005899_muscle | 0 .74 RPM | 107 .27 RPM |
SRP017611_brain | 6 .81 RPM | 52 .99 RPM |
SRP017611_kidney | 2 .07 RPM | 17 .72 RPM |
SRP017611_liver | 0 .23 RPM | 2 .87 RPM |
SRP030211_testis | 1 .79 RPM | 84 .50 RPM |