RetrogeneDB ID: | retro_btau_1482 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:15271580..15272159(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSBTAG00000000236 | ||
Aliases: | None | ||
Description: | 14-3-3 protein zeta/delta [Source:UniProtKB/Swiss-Prot;Acc:P63103] |
Percent Identity: | 72.59 % |
Parental protein coverage: | 79.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKV |
AYK.VVGA.RSSWR.VSSI.QK..............REK.ET.LRDICND.L.LL.KFLIP.ASQAESKV | |
Retrocopy | AYKKVVGACRSSWRLVSSIDQKIKVLSENSRWFKN-REKMETRLRDICNDILFLLGKFLIPSASQAESKV |
Parental | FYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV-FYYEILNSP |
F.LK.KGDYY..LA.V.AGDDK.GIVDQS.QAYQEAFEISKK..QPTHPIRL.L.LNF.V..Y.EIL.SP | |
Retrocopy | FCLKIKGDYYYSLAKVVAGDDKRGIVDQSWQAYQEAFEISKK*TQPTHPIRLDLSLNFCV>YY-EILKSP |
Parental | EKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLT-LWTSDTQGDEAEAGE |
EK..S.AKTAFD.AIAELDTLSE.S.K.STLI.QLLRDNLT.LWT.DTQ.DEAE..E | |
Retrocopy | EKIGSRAKTAFDGAIAELDTLSEGSHKNSTLIIQLLRDNLT<LWTLDTQRDEAEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .44 RPM |
ERP005899_muscle | 0 .05 RPM | 107 .27 RPM |
SRP017611_brain | 0 .00 RPM | 52 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .72 RPM |
SRP017611_liver | 0 .00 RPM | 2 .87 RPM |
SRP030211_testis | 0 .01 RPM | 84 .50 RPM |