RetrogeneDB ID: | retro_hsap_38 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:56777403..56778534(-) | ||
Located in intron of: | ENSG00000250961 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000169067 | |
Aliases: | ACTBL2, ACT | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSG00000075624 | ||
Aliases: | ACTB, BRWS1, PS1TP5BP1 | ||
Description: | actin, beta [Source:HGNC Symbol;Acc:132] |
Percent Identity: | 91.71 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
D....ALVVDNGSGMCKAGF.GDDAPRAVFPS..GRPRHQGVMVGMGQKD.YVGDEAQSKRG.LTLKYPI | |
Retrocopy | DNELSALVVDNGSGMCKAGFGGDDAPRAVFPSMIGRPRHQGVMVGMGQKDCYVGDEAQSKRGVLTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHG.VTNWDDMEKIW.HTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTH.VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHIVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
.KEKLCYVALDFEQEM..AA.SSS.E.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFNS | |
Retrocopy | VKEKLCYVALDFEQEMVRAAASSSPERSYELPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIITLAPSTMKIKIIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | FQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 5336 .71 RPM |
bodymap2_adrenal | 0 .00 RPM | 5105 .37 RPM |
bodymap2_brain | 0 .00 RPM | 2354 .74 RPM |
bodymap2_breast | 0 .06 RPM | 3342 .68 RPM |
bodymap2_colon | 0 .00 RPM | 6846 .79 RPM |
bodymap2_heart | 0 .00 RPM | 595 .89 RPM |
bodymap2_kidney | 0 .00 RPM | 2141 .79 RPM |
bodymap2_liver | 0 .00 RPM | 1498 .34 RPM |
bodymap2_lung | 0 .00 RPM | 6019 .68 RPM |
bodymap2_lymph_node | 0 .00 RPM | 3028 .73 RPM |
bodymap2_ovary | 0 .00 RPM | 4495 .81 RPM |
bodymap2_prostate | 0 .07 RPM | 6984 .69 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 729 .01 RPM |
bodymap2_testis | 0 .00 RPM | 2997 .25 RPM |
bodymap2_thyroid | 0 .08 RPM | 1886 .18 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 9289 .16 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CZD | POLR2A | 5:56778524..56778699 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_154748 | 1624 libraries | 167 libraries | 37 libraries | 1 library | 0 libraries |
TSS #2 | TSS_154749 | 1431 libraries | 253 libraries | 116 libraries | 22 libraries | 7 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |