Parental gene:

ACTG1, ENSCJAG00000002885

Aliases:None
Description:actin, gamma 1 [Source:HGNC Symbol;Acc:144]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:47949516..47951180(-)


>ENSCJAG00000002885
ATGGAAGAAGAAATTGCTGCGCTCGTCATCGACAATGGTTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGACGCCCC
CCGAGCCGTGTTTCCCTCCATTGTCGGGCGCCCTCGGCACCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCCTACG
TGGGCGACGAGGCCCAGAGCAAGCGCGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAATTGGGAT
GATATGGAGAAAATCTGGCACCACACTTTTTACAATGAGTTGCGTGTGGCCCCGGAGGAGCACCCCGTGCTGCTGACCGA
GGCCCCCCTGAACCCCAAGGCCAACAGAGAGAAGATGACTCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACG
TGGCTATCCAGGCCGTGCTGTCCCTCTACGCCTCTGGGCGCACCACTGGTATTGTCATGGACTCTGGAGACGGGGTAACC
CACACGGTGCCCATTTATGAGGGCTATGCCCTTCCACACGCTATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGA
CTACCTCATGAAGATCCTCACGGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTACGCGACATCAAGG
AGAAGCTGTGCTATGTCGCCCTGGACTTCGAGCAGGAGATGGCCACAGCTGCATCCTCCTCCTCTCTGGAGAAGAGCTAT
GAGCTGCCTGACGGCCAGGTCATCACCATTGGTAACGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCTTTTCT
TGGCATGGAATCTTGTGGCATCCATGAGACCACCTTCAACTCCATCATGAAGTGTGATGTGGACATCCGCAAAGACCTGT
ACGCCAACACTGTGCTGTCTGGCGGCACCACCATGTACCCAGGCATCGCCGACAGGATGCAGAAGGAGATCACTGCTCTT
GCGCCCAGCACCATGAAGATCAAGATCATTGCACCCCCAGAGCGTAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGC
CTCACTGTCCACCTTCCAACAGATGTGGATTAGCAAGCAGGAGTACGATGAGTCTGGTCCCTCCATCGTCCACCGCAAAT
GCTTCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 124 .18 RPM
SRP051959_skeletal_muscle 93 .38 RPM
SRP051959_lymph_node 162 .60 RPM
SRP051959_lung 157 .88 RPM
SRP051959_liver 112 .98 RPM
SRP051959_kidney 203 .34 RPM
SRP051959_heart 104 .00 RPM
SRP051959_colon 295 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 ortholog_one2many 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG00000016015 ortholog_one2one 1 retrogene
retro_amel_929,
Bos taurus ENSBTAG00000006189 possible_ortholog 2 retrogenes
retro_btau_286, retro_btau_903,
Callithrix jacchus ENSCJAG00000000008 within_species_paralog 2 retrogenes
retro_cjac_243, retro_cjac_56,
Cavia porcellus ENSCPOG00000012101 ortholog_one2one 1 retrogene
retro_cpor_361,
Equus caballus ENSECAG00000018600 ortholog_one2one 1 retrogene
retro_ecab_98,
Felis catus ENSFCAG00000026434 ortholog_one2one 2 retrogenes
retro_fcat_257, retro_fcat_377,
Homo sapiens ENSG00000184009 ortholog_one2one 10 retrogenes
retro_hsap_1548, retro_hsap_1607, retro_hsap_2405, retro_hsap_2591, retro_hsap_2605, retro_hsap_3466, retro_hsap_3631, retro_hsap_409, retro_hsap_4818, retro_hsap_4935,
Gallus gallus ENSGALG00000028749 ortholog_one2many 1 retrogene
retro_ggal_6,
Gorilla gorilla ENSGGOG00000014043 ortholog_one2one 6 retrogenes
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macropus eugenii ENSMEUG00000016247 possible_ortholog 57 retrogenes
retro_meug_1006, retro_meug_1010, retro_meug_1018, retro_meug_1042, retro_meug_105, retro_meug_1085, retro_meug_1147, retro_meug_1186, retro_meug_1200, retro_meug_1230, retro_meug_1237, retro_meug_1380, retro_meug_1414, retro_meug_1437, retro_meug_1529, retro_meug_1534, retro_meug_1557, retro_meug_1588, retro_meug_1613, retro_meug_1624, retro_meug_1654, retro_meug_1656, retro_meug_1664, retro_meug_1669, retro_meug_1708, retro_meug_1716, retro_meug_1723, retro_meug_1753, retro_meug_1763, retro_meug_18, retro_meug_1935, retro_meug_1969, retro_meug_197, retro_meug_1982, retro_meug_1991, retro_meug_2100, retro_meug_2176, retro_meug_218, retro_meug_270, retro_meug_333, retro_meug_370, retro_meug_379, retro_meug_468, retro_meug_506, retro_meug_556, retro_meug_574, retro_meug_581, retro_meug_61, retro_meug_735, retro_meug_790, retro_meug_833, retro_meug_90, retro_meug_900, retro_meug_915, retro_meug_924, retro_meug_925, retro_meug_959,
Microcebus murinus ENSMICG00000014863 possible_ortholog 3 retrogenes
retro_mmur_23, retro_mmur_352, retro_mmur_6,
Monodelphis domestica ENSMODG00000002647 ortholog_one2one 3 retrogenes
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furo ENSMPUG00000011610 ortholog_one2one 1 retrogene
retro_mputfur_279,
Mus musculus ENSMUSG00000062825 ortholog_one2one 7 retrogenes
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Nomascus leucogenys ENSNLEG00000013385 possible_ortholog 15 retrogenes
retro_nleu_1008, retro_nleu_1058, retro_nleu_1059, retro_nleu_1150, retro_nleu_1347, retro_nleu_1474, retro_nleu_1729, retro_nleu_2193, retro_nleu_2393, retro_nleu_2574, retro_nleu_2669, retro_nleu_3032, retro_nleu_344, retro_nleu_813, retro_nleu_974,
Nomascus leucogenys ENSNLEG00000015506 possible_ortholog 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Oryctolagus cuniculus ENSOCUG00000005867 possible_ortholog 1 retrogene
retro_ocun_720,
Otolemur garnettii ENSOGAG00000008040 possible_ortholog 3 retrogenes
retro_ogar_148, retro_ogar_1808, retro_ogar_2430,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000008735 ortholog_one2one 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pelodiscus sinensis ENSPSIG00000002102 ortholog_one2many 2 retrogenes
retro_psin_25, retro_psin_4,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Sorex araneus ENSSARG00000012197 possible_ortholog 1 retrogene
retro_sara_267,
Sus scrofa ENSSSCG00000028355 ortholog_one2one 1 retrogene
retro_sscr_389,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Tupaia belangeri ENSTBEG00000010781 possible_ortholog 1 retrogene
retro_tbel_422,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_139 98.13 100.00
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2. retro_cjac_336 96.27 100.00
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3. retro_cjac_377 99.47 100.00
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Download FASTA sequences of all ENSCJAG00000002885 retrocopies