RetrogeneDB ID: | retro_cjac_336 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 14:42169702..42170824(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023416 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSCJAG00000002885 | ||
Aliases: | None | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 96.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
MEEEI.ALVIDNGSGMCKAGFAGDDAPRA.FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP | |
Retrocopy | MEEEIDALVIDNGSGMCKAGFAGDDAPRAMFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHGIVTNWDDMEKIWHHTFY.ELRVA.EEHPVLLTEAP..PKANRE.MTQIMFETFNTPAMYVAIQAVL | |
Retrocopy | IEHGIVTNWDDMEKIWHHTFY-ELRVALEEHPVLLTEAPRTPKANRE-MTQIMFETFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLYASG.TTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGR.LTDYLMKIL.ER.YSFTTTAEREIVR | |
Retrocopy | SLYASGHTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRNLTDYLMKILRERSYSFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
DIKEKLCYVALDF.QEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN | |
Retrocopy | DIKEKLCYVALDFKQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL.PSTMKIKIIAPPE.KYSVWIGGSILASLS | |
Retrocopy | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALVPSTMKIKIIAPPEHKYSVWIGGSILASLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQMWISKQEYDESGPSIVHRKCF | |
Retrocopy | TFQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .29 RPM | 295 .29 RPM |
SRP051959_heart | 0 .02 RPM | 104 .00 RPM |
SRP051959_kidney | 0 .38 RPM | 203 .34 RPM |
SRP051959_liver | 0 .19 RPM | 112 .98 RPM |
SRP051959_lung | 0 .23 RPM | 157 .88 RPM |
SRP051959_lymph_node | 0 .30 RPM | 162 .60 RPM |
SRP051959_skeletal_muscle | 0 .09 RPM | 93 .38 RPM |
SRP051959_spleen | 0 .32 RPM | 124 .18 RPM |