RetrogeneDB ID: | retro_onil_56 | ||
Retrocopylocation | Organism: | Tilapia (Oreochromis niloticus) | |
Coordinates: | GL831378.1:229598..230006(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSONIG00000019975 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 97.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MARTKQTARKSTGGKAPRKQLATKAARKSAP.TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR | |
Retrocopy | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
LVREIAQDFKTDLRFQS.A..ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012702 | 10 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024843 | 2 retrocopies | |
Equus caballus | ENSECAG00000006904 | 1 retrocopy | |
Equus caballus | ENSECAG00000016948 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000004118 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008083 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000021624 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000015447 | 10 retrocopies | |
Mustela putorius furo | ENSMPUG00000004555 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024644 | 2 retrocopies | |
Oreochromis niloticus | ENSONIG00000015805 | 7 retrocopies | |
Oreochromis niloticus | ENSONIG00000019975 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024226 | 8 retrocopies | |
Tupaia belangeri | ENSTBEG00000006177 | 13 retrocopies | |
Tupaia belangeri | ENSTBEG00000016171 | 7 retrocopies |