Parental gene:

ACTB, ENSECAG00000018600

Aliases:None
Description:Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/TrEMBL;Acc:F7A5E3]
Organism:Horse (Equus caballus)
Coordinates:11:1628564..1630637(+)


>ENSECAG00000018600
ATGGAAGAAGAGATCGCTGCGCTCGTCATCGACAACGGCTCCGGGATGTGCAAAGCTGGCTTTGCTGGGGACGACGCCCC
CCGGGCTGTGTTCCCGTCCATCGTGGGGCGCCCCCGACACCAGGGCGTGATGGTGGGCATGGGGCAGAAGGACAGCTACG
TGGGCGACGAGGCCCAGAGCAAGCGCGGCATCCTGACCCTCAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCCGAGGAGCACCCCGTGCTGCTGACCGA
GGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACTCAGATCATGTTCGAGACTTTCAACACTCCGGCTATGTACG
TGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACAACTGGTATTGTCATGGACTCTGGGGACGGGGTCACC
CACACTGTGCCCATCTATGAGGGGTACGCTCTGCCCCACGCCATCTTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGA
CTACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACTACCACGGCCGAGCGGGAAATCGTGCGTGACATCAAGG
AGAAGCTCTGCTATGTCGCCCTGGATTTCGAGCAGGAGATGGCCACCGCTGCGTCGTCCTCCTCCCTGGAGAAGAGCTAT
GAGCTGCCCGACGGCCAGGTGATCACCATCGGCAACGAGCGGTTCCGGTGTCCAGAGGCGCTGTTCCAGCCGTCCTTCCT
GGGTATGGAGTCTTGTGGTATCCACGAGACCACCTTCAACTCCATCATGAAATGTGACGTCGACATTCGCAAGGACCTGT
ATGCTAACACAGTGCTGTCCGGTGGGACCACCATGTACCCCGGCATTGCCGACAGGATGCAGAAGGAAATCACGGCCCTG
GCCCCCAGCACGATGAAGATTAAGATCATTGCTCCTCCTGAACGCAAGTACTCAGTGTGGATCGGGGGCTCCATCCTGGC
CTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCGGGCCCCTCCATCGTCCACCGCAAAT
GCTTCTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 2152 .76 RPM
SRP021940_embryo 3537 .37 RPM
SRP021940_cerebellum 1785 .49 RPM
SRP021940_testis 2537 .71 RPM
SRP021940_placental_villous 3022 .15 RPM
SRP021940_articular_cartilage 1578 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 ortholog_one2one 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG00000016015 ortholog_one2one 1 retrogene
retro_amel_929,
Callithrix jacchus ENSCJAG00000002885 ortholog_one2one 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Cavia porcellus ENSCPOG00000012101 ortholog_one2one 1 retrogene
retro_cpor_361,
Equus caballus ENSECAG00000015935 within_species_paralog 2 retrogenes
retro_ecab_271, retro_ecab_994,
Felis catus ENSFCAG00000026434 ortholog_one2one 2 retrogenes
retro_fcat_257, retro_fcat_377,
Homo sapiens ENSG00000184009 ortholog_one2one 10 retrogenes
retro_hsap_1548, retro_hsap_1607, retro_hsap_2405, retro_hsap_2591, retro_hsap_2605, retro_hsap_3466, retro_hsap_3631, retro_hsap_409, retro_hsap_4818, retro_hsap_4935,
Gallus gallus ENSGALG00000028749 ortholog_one2one 1 retrogene
retro_ggal_6,
Gorilla gorilla ENSGGOG00000014043 ortholog_one2one 6 retrogenes
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Monodelphis domestica ENSMODG00000002647 ortholog_one2one 3 retrogenes
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furo ENSMPUG00000011610 ortholog_one2one 1 retrogene
retro_mputfur_279,
Mus musculus ENSMUSG00000062825 ortholog_one2one 7 retrogenes
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Nomascus leucogenys ENSNLEG00000015506 possible_ortholog 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000008735 ortholog_one2one 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pelodiscus sinensis ENSPSIG00000002102 ortholog_one2one 2 retrogenes
retro_psin_25, retro_psin_4,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Sus scrofa ENSSSCG00000028355 ortholog_one2one 1 retrogene
retro_sscr_389,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_98 92.25 99.73
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Download FASTA sequences of all ENSECAG00000018600 retrocopies