RetrogeneDB ID: | retro_ecab_785 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:40986032..40986653(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSECAG00000015242 | ||
Aliases: | None | ||
Description: | nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629] |
Percent Identity: | 80.37 % |
Parental protein coverage: | 98.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSE |
EATET.PATEQELPQ.QAETGSGTESDSDESV.ELEEQDSTQA....A.LAAAA...E.PVSKAK.SRSE | |
Retrocopy | EATETIPATEQELPQTQAETGSGTESDSDESVSELEEQDSTQA----ADLAAAAGNHEQPVSKAK*SRSE |
Parental | KKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVLGEAKIEDLSQQAQLAAAEKF |
KKA.KAMSKLGLRQVTGV.RVTI.K.K.I..VITKPDVYKSPAS.TYIVLGEAKIE.LSQQ.QLAAAEKF | |
Retrocopy | KKAQKAMSKLGLRQVTGVIRVTI*KPKQIFLVITKPDVYKSPASGTYIVLGEAKIEVLSQQVQLAAAEKF |
Parental | KVQGE-AVSNIQENTQTPTV-QEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIM |
KVQGE..VSN.QENT.......E...E.E.DET.VEVKDIELVMSQAN.SRAKAV.ALKNNSNDIVNAI. | |
Retrocopy | KVQGE<SVSNVQENTDSSCT>EESEKE-EADETDVEVKDIELVMSQANLSRAKAV*ALKNNSNDIVNAIL |
Parental | ELTM |
ELTM | |
Retrocopy | ELTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .18 RPM | 21 .66 RPM |
SRP021940_cerebellum | 0 .05 RPM | 2 .65 RPM |
SRP021940_embryo | 0 .03 RPM | 261 .40 RPM |
SRP021940_placental_villous | 0 .00 RPM | 127 .59 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 137 .45 RPM |
SRP021940_testis | 0 .00 RPM | 106 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Equus caballus | ENSECAG00000015242 | 1 retrocopy |
retro_ecab_785 ,
|
Homo sapiens | ENSG00000196531 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Macaca mulatta | ENSMMUG00000003073 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002175 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002150 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |