RetrogeneDB ID: | retro_shar_213 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834676.1:1879137..1879504(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSSHAG00000002175 | ||
Aliases: | None | ||
Description: | nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629] |
Percent Identity: | 59.52 % |
Parental protein coverage: | 57.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TRVTIRKSKNILFVITKPDVYKS-PASDTYIVFGEAKIEDLSQQAQLAAAEKFK-VQGEAVSNIQENTQT |
T.VTI.K.KN.LFVI.KPD...S.PASD...VFG..K..DLSQ.AQL.A.E.FK.V..E.V.N..E..QT | |
Retrocopy | TSVTIWKPKNFLFVIKKPDFCRS<PASDSHMVFGKEKP*DLSQEAQLDAPENFK<VEKEEVPNTAEHIQT |
Parental | PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM |
..VQEE..EE..DE...EVK.IELV..Q.N.SR.KAV..LKNNSND.VN.I.E..M | |
Retrocopy | AIVQEENKEE-TDEISIEVKGIELVTDQPNMSRVKAV*ILKNNSNDTVNPITEIMM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Bos taurus | ENSBTAG00000010701 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Equus caballus | ENSECAG00000015242 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010458 | 5 retrocopies | |
Homo sapiens | ENSG00000196531 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Macaca mulatta | ENSMMUG00000003073 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017449 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000004670 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002175 | 1 retrocopy |
retro_shar_213 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000009028 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002150 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |