RetrogeneDB ID: | retro_hsap_77 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:59667893..59668541(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253506 | |
Aliases: | NACA2, ANAC, NACAL | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NACA | ||
Ensembl ID: | ENSG00000196531 | ||
Aliases: | NACA, NACA1, skNAC | ||
Description: | nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629] |
Percent Identity: | 90.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQS |
MPGEATETVPATEQELPQ.QAETGSGT.SDS.ESVP..EEQDSTQ.TTQ.A.L.AAAEIDEEPV.KAKQS | |
Retrocopy | MPGEATETVPATEQELPQSQAETGSGTASDSGESVPGIEEQDSTQTTTQKAWLVAAAEIDEEPVGKAKQS |
Parental | RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAA |
RSEK.ARKAMSKLGL.QVTGVTRVTI.KSKNILFVITK.DVYKSPASD.YIVFGEAKI.DLSQQAQLAAA | |
Retrocopy | RSEKRARKAMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAYIVFGEAKIQDLSQQAQLAAA |
Parental | EKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAI |
EKF.VQGEAV.NIQENTQTPTVQEESEEEEVDETGVEVKD..LVMSQANVSRAKAVRALKNNSNDIVNAI | |
Retrocopy | EKFRVQGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKDVKLVMSQANVSRAKAVRALKNNSNDIVNAI |
Parental | MELTM |
MELT. | |
Retrocopy | MELTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .18 RPM | 638 .30 RPM |
bodymap2_adrenal | 0 .29 RPM | 666 .69 RPM |
bodymap2_brain | 0 .12 RPM | 300 .74 RPM |
bodymap2_breast | 0 .25 RPM | 528 .53 RPM |
bodymap2_colon | 0 .04 RPM | 793 .43 RPM |
bodymap2_heart | 0 .00 RPM | 584 .27 RPM |
bodymap2_kidney | 0 .12 RPM | 312 .09 RPM |
bodymap2_liver | 0 .04 RPM | 215 .55 RPM |
bodymap2_lung | 0 .02 RPM | 519 .39 RPM |
bodymap2_lymph_node | 0 .00 RPM | 580 .94 RPM |
bodymap2_ovary | 0 .56 RPM | 1123 .78 RPM |
bodymap2_prostate | 0 .02 RPM | 761 .06 RPM |
bodymap2_skeletal_muscle | 0 .05 RPM | 2154 .57 RPM |
bodymap2_testis | 24 .30 RPM | 575 .23 RPM |
bodymap2_thyroid | 0 .11 RPM | 445 .42 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 713 .96 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_61506 | 60 libraries | 9 libraries | 190 libraries | 322 libraries | 1248 libraries |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1233 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004175 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000141 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000010701 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000014522 | 2 retrocopies | |
Equus caballus | ENSECAG00000015242 | 1 retrocopy | |
Homo sapiens | ENSG00000196531 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000004598 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000016465 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000001169 | 16 retrocopies | |
Macaca mulatta | ENSMMUG00000003073 | 4 retrocopies | |
Mus musculus | ENSMUSG00000061315 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001781 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000007067 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002175 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002150 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004028 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .21 RPM |
CEU_NA11843 | 0 .28 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .18 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .18 RPM |
CEU_NA12827 | 0 .28 RPM |
CEU_NA12872 | 0 .16 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .12 RPM |
FIN_HG00328 | 0 .12 RPM |
FIN_HG00338 | 0 .15 RPM |
FIN_HG00349 | 0 .46 RPM |
FIN_HG00375 | 0 .17 RPM |
FIN_HG00377 | 0 .23 RPM |
FIN_HG00378 | 0 .11 RPM |
GBR_HG00099 | 0 .15 RPM |
GBR_HG00111 | 0 .15 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .10 RPM |
GBR_HG00131 | 0 .20 RPM |
GBR_HG00133 | 0 .14 RPM |
GBR_HG00134 | 0 .11 RPM |
GBR_HG00137 | 0 .16 RPM |
GBR_HG00142 | 0 .25 RPM |
GBR_HG00143 | 0 .19 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .19 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .14 RPM |
TSI_NA20538 | 0 .32 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .08 RPM |
TSI_NA20798 | 0 .16 RPM |
YRI_NA18870 | 0 .30 RPM |
YRI_NA18907 | 0 .21 RPM |
YRI_NA18916 | 0 .17 RPM |
YRI_NA19093 | 0 .08 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .17 RPM |
YRI_NA19213 | 0 .10 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .06 RPM |