RetrogeneDB ID: | retro_ggor_734 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:84570803..84571210(-) | ||
Located in intron of: | ENSGGOG00000002577 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM22 | ||
Ensembl ID: | ENSGGOG00000013230 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.21 % |
Parental protein coverage: | 95.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVRSAAGAT-FDLSLFVAQ |
A..AGEP.SP.ELLPKGD.EK..EELEEDD.E.LDETLSERLWGL.EMFP.RVRSAA....F.LSLFVA. | |
Retrocopy | ATVAGEPLSPEELLPKGDVEKTKEELEEDDEEKLDETLSERLWGLMEMFPKRVRSAARTS<FFLSLFVAH |
Parental | KMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI |
KMYRFSRAA.WIGTTSFMILVLPVVFETEK.Q.EQQQQLQQ.QILLGPNTGLSG.M.GALPSLPGKI | |
Retrocopy | KMYRFSRAAVWIGTTSFMILVLPVVFETEKMQIEQQQQLQQQQILLGPNTGLSGRMQGALPSLPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 26 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .66 RPM |
SRP007412_heart | 0 .00 RPM | 15 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .95 RPM |
SRP007412_liver | 0 .00 RPM | 20 .92 RPM |
SRP007412_testis | 0 .00 RPM | 37 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_907 |
Pan troglodytes | retro_ptro_627 |
Pongo abelii | retro_pabe_782 |
Macaca mulatta | retro_mmul_1113 |