RetrogeneDB ID:

retro_vpac_586

Retrocopy
location
Organism:Alpaca (Vicugna pacos)
Coordinates:scaffold_59011:914..1238(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TOMM22
Ensembl ID:ENSVPAG00000001485
Aliases:None
Description:translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:HGNC Symbol;Acc:18002]


Retrocopy-Parental alignment summary:






>retro_vpac_586
ATGGCTGCCGCCGCCCCTGCGGCCAGCCCAGGGGCGCCCCTGTCCCCCAAGGAATTGCTTCCGAAAGGCAATGCTAAGAA
GCCTGAAGAGGAGCTGGAAGAGAAAGACGACGAGGAGCTAGATGACACCCTGTCGGAGAGACTCTGGAGTTTGACAGAAA
TGTTCCTGGAGAGTGTCTGGTCCGCGGCTGCAGCTACTTTTGATCTCTCCCTCTTCGTGGCTCAAAAAATGTACGGGTTT
TCCAGGGCAGCCTTGTGGATTGGAACCACTTCCTTCATGATCCTGGTTCTTCCTGTCGTCTTTGAGACTGAGAAGTTGCA
GATG

ORF - retro_vpac_586 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.89 %
Parental protein coverage: 91.53 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAAAPAAGPGVPLSPDELLPKGDAEKPEEELEEEDDEELDETLSERLWGLTEMFPESVRSAAGATFDLS
MAAAAPAA.PG.PLSP.ELLPKG.A.KPEEELEE.DDEELD.TLSERLW.LTEMF.ESV.SAA.ATFDLS
RetrocopyMAAAAPAASPGAPLSPKELLPKGNAKKPEEELEEKDDEELDDTLSERLWSLTEMFLESVWSAAAATFDLS
ParentalLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQM
LFVAQKMY.FSRAALWIGTTSFMILVLPVVFETEKLQM
RetrocopyLFVAQKMYGFSRAALWIGTTSFMILVLPVVFETEKLQM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Vicugna pacos was not studied using RNA-Seq expression data.
Vicugna pacos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_vpac_586 retrocopy.
Vicugna pacos was not studied using FANTOM5 data.
retro_vpac_586 was not experimentally validated.

Retrocopy orthology:
Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 85 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000106923 retrocopies
Canis familiaris ENSCAFG000000013832 retrocopies
Callithrix jacchus ENSCJAG000000117315 retrocopies
Cavia porcellus ENSCPOG000000059631 retrocopy
Equus caballus ENSECAG000000103591 retrocopy
Erinaceus europaeus ENSEEUG000000064281 retrocopy
Echinops telfairi ENSETEG000000005447 retrocopies
Homo sapiens ENSG000001002166 retrocopies
Gorilla gorilla ENSGGOG000000132304 retrocopies
Macropus eugenii ENSMEUG000000029011 retrocopy
Microcebus murinus ENSMICG000000117923 retrocopies
Myotis lucifugus ENSMLUG000000037612 retrocopies
Macaca mulatta ENSMMUG000000003648 retrocopies
Mustela putorius furoENSMPUG000000131562 retrocopies
Mus musculus ENSMUSG000000224272 retrocopies
Nomascus leucogenys ENSNLEG000000151596 retrocopies
Otolemur garnettii ENSOGAG000000295839 retrocopies
Pongo abelii ENSPPYG000000118256 retrocopies
Pan troglodytes ENSPTRG000000143746 retrocopies
Rattus norvegicus ENSRNOG000000140584 retrocopies
Sus scrofa ENSSSCG000000000971 retrocopy
Tupaia belangeri ENSTBEG000000156834 retrocopies
Vicugna pacos ENSVPAG00000001485 1 retrocopy
retro_vpac_586 ,



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