RetrogeneDB ID: | retro_pabe_1088 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13_random:3603451..3603802(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM22 | ||
Ensembl ID: | ENSPPYG00000011825 | ||
Aliases: | None | ||
Description: | translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:HGNC Symbol;Acc:18002] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 83.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AEKPEEELEEDDDEELDETLSERLWGLTEMF-PERVRSAAGATFDLS-LFVAQKMYRFSRAALWIGTTSF |
..K.EEEL.E.D..E.DETLSER.WGL.EMF.PER..S...ATF.LS.LFVAQKMY.FSRAALWIGT... | |
Retrocopy | SQKTEEELDEGDHKEPDETLSERPWGLKEMF<PERGHSEGRATFHLS>LFVAQKMYWFSRAALWIGTSFL |
Parental | MILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI |
MILVL.V.FETEKLQM.Q.QQ.Q.RQI.L.P.T.......G..PSLPGKI | |
Retrocopy | MILVLVVIFETEKLQMGQPQQQQRRQIRLQPHTAVQRNARGP-PSLPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .69 RPM |
SRP007412_heart | 0 .00 RPM | 17 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 29 .14 RPM |
SRP007412_liver | 0 .00 RPM | 22 .71 RPM |