RetrogeneDB ID: | retro_rnor_2280 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:34567332..34567638(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tomm22 | ||
Ensembl ID: | ENSRNOG00000014058 | ||
Aliases: | Tomm22, TOM22, rTOM22 | ||
Description: | Mitochondrial import receptor subunit TOM22 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q75Q41] |
Percent Identity: | 63.11 % |
Parental protein coverage: | 71.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQ |
E...E.L......F.ER..SA.GATFDL.LF.AQK.YR.SRAAL.IGTTS..ILVLPVVFE.E.LQME.Q | |
Retrocopy | ESV*ETLGSDEDFFLERIPSATGATFDLLLFLAQKRYRYSRAALRIGTTSLVILVLPVVFERETLQMEEQ |
Parental | QQLQQRQILLGPNT--GLSGGMPGALPPLPGKI |
QQ.QQRQ.LL.PNT..G......G..P.LPGKI | |
Retrocopy | QQVQQRQRLLRPNTTRGCPEECQGHFP-LPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .78 RPM |
SRP017611_liver | 0 .00 RPM | 18 .83 RPM |