Parental gene:

TOMM22, ENSCPOG00000005963

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_28:22889636..22890908(+)


>ENSCPOG00000005963
ATGGCCGCCGCACCCGCTGCCGCCGGTACCGGCGAGCCCATGTCCCCAGACGAGTTGCTCCCGAAAGGTGACGCGGAGAA
GACTGAAGAAGAGCTGGAAGAGGACGACGATGACGAGCTGGACGAGACCCTGGCCGAGAGACTGTGGGGTCTGACGGAGA
TGTTCCCCGAGAGGGTCCGGTCAGCGGCCGGAGCCACTTTCGATCTCTCCCTCTTTGTGGCTCAAAAAATGTACAGGTTT
TCCAGGGCAGCCTTGTGGATCGGGACCACTTCCTTTATGATCCTGGTTCTTCCTGTGGTCTTTGAGACTGAGAAGTTGCA
AATGGAGCCCGGACGTGGGGTTTTTTCTATCCAGATACTTCTAGGGCCTAACACAGGACTCTCAGGAGGAATGCCAGGGG
CTCTACCTTCGCTTCCGGGAAAGATCTAG

Library Parental gene expression (RPM)
SRP017611_brain 13 .23 RPM
SRP017611_kidney 27 .74 RPM
SRP017611_liver 11 .88 RPM
SRP040447_lung 16 .80 RPM
SRP040447_skeletal_muscle 23 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010692 ortholog_one2many 3 retrogenes
retro_amel_542, retro_amel_58, retro_amel_867,
Canis familiaris ENSCAFG00000001383 ortholog_one2many 2 retrogenes
retro_cfam_1817, retro_cfam_197,
Callithrix jacchus ENSCJAG00000011731 ortholog_one2many 5 retrogenes
retro_cjac_1220, retro_cjac_1230, retro_cjac_3675, retro_cjac_498, retro_cjac_94,
Equus caballus ENSECAG00000010359 ortholog_one2one 1 retrogene
retro_ecab_334,
Erinaceus europaeus ENSEEUG00000006428 ortholog_one2one 1 retrogene
retro_eeur_29,
Echinops telfairi ENSETEG00000000544 ortholog_one2one 7 retrogenes
retro_etel_123, retro_etel_1477, retro_etel_154, retro_etel_1753, retro_etel_190, retro_etel_2025, retro_etel_599,
Homo sapiens ENSG00000100216 ortholog_one2one 6 retrogenes
retro_hsap_1249, retro_hsap_2875, retro_hsap_3003, retro_hsap_4928, retro_hsap_633, retro_hsap_907,
Gorilla gorilla ENSGGOG00000013230 ortholog_one2one 4 retrogenes
retro_ggor_3084, retro_ggor_554, retro_ggor_734, retro_ggor_980,
Macropus eugenii ENSMEUG00000002901 ortholog_one2one 1 retrogene
retro_meug_855,
Microcebus murinus ENSMICG00000011792 ortholog_one2one 3 retrogenes
retro_mmur_1549, retro_mmur_408, retro_mmur_892,
Myotis lucifugus ENSMLUG00000003761 ortholog_one2many 2 retrogenes
retro_mluc_2116, retro_mluc_543,
Macaca mulatta ENSMMUG00000000364 ortholog_one2one 8 retrogenes
retro_mmul_1020, retro_mmul_1113, retro_mmul_1459, retro_mmul_241, retro_mmul_2426, retro_mmul_2438, retro_mmul_2532, retro_mmul_498,
Mustela putorius furo ENSMPUG00000013156 ortholog_one2one 2 retrogenes
retro_mputfur_1038, retro_mputfur_1254,
Mus musculus ENSMUSG00000022427 ortholog_one2one 2 retrogenes
retro_mmus_1884, retro_mmus_2496,
Nomascus leucogenys ENSNLEG00000015159 ortholog_one2one 6 retrogenes
retro_nleu_2116, retro_nleu_2142, retro_nleu_2249, retro_nleu_375, retro_nleu_454, retro_nleu_617,
Otolemur garnettii ENSOGAG00000029583 ortholog_one2many 9 retrogenes
retro_ogar_1153, retro_ogar_1294, retro_ogar_1905, retro_ogar_2022, retro_ogar_2067, retro_ogar_214, retro_ogar_3111, retro_ogar_3328, retro_ogar_792,
Pongo abelii ENSPPYG00000011825 ortholog_one2one 6 retrogenes
retro_pabe_1041, retro_pabe_1088, retro_pabe_1968, retro_pabe_2489, retro_pabe_563, retro_pabe_782,
Pan troglodytes ENSPTRG00000014374 ortholog_one2one 6 retrogenes
retro_ptro_1583, retro_ptro_2031, retro_ptro_2117, retro_ptro_461, retro_ptro_627, retro_ptro_860,
Rattus norvegicus ENSRNOG00000014058 ortholog_one2one 4 retrogenes
retro_rnor_1323, retro_rnor_2280, retro_rnor_548, retro_rnor_549,
Sus scrofa ENSSSCG00000000097 ortholog_one2one 1 retrogene
retro_sscr_310,
Tupaia belangeri ENSTBEG00000015683 ortholog_one2one 4 retrogenes
retro_tbel_1810, retro_tbel_2901, retro_tbel_2922, retro_tbel_3041,
Vicugna pacos ENSVPAG00000001485 ortholog_one2one 1 retrogene
retro_vpac_586,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_754 56.38 64.79
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Download FASTA sequences of all ENSCPOG00000005963 retrocopies