RetrogeneDB ID: | retro_rnor_1323 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:78603558..78603925(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tomm22 | ||
Ensembl ID: | ENSRNOG00000014058 | ||
Aliases: | Tomm22, TOM22, rTOM22 | ||
Description: | Mitochondrial import receptor subunit TOM22 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q75Q41] |
Percent Identity: | 74.8 % |
Parental protein coverage: | 85.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PKAEAEKAEEDLEEDDDDELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTT |
PKAE....EE.LEED.D.ELDETL.ERLWGLTE.FPERV.SAAG.TFDLSLFV.QKM.RF.RAAL.I.TT | |
Retrocopy | PKAEVQTIEEELEEDNDGELDETLLERLWGLTELFPERV*SAAGGTFDLSLFVSQKMNRFPRAALRIRTT |
Parental | SFMILVLPVV-FETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPPLPGKI |
SF..LV.P.V.FETEKLQMEQ.QQLQQ.Q..LGP..GLSGGM....PPLPGKI | |
Retrocopy | SFLTLVHPAV>FETEKLQMEQHQQLQQ*QTFLGPDPGLSGGMAEPPPPLPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .78 RPM |
SRP017611_liver | 0 .00 RPM | 18 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1884 |