RetrogeneDB ID: | retro_mmul_1113 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:85545622..85546011(-) | ||
Located in intron of: | ENSMMUG00000010229 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4659 | ||
Ensembl ID: | ENSMMUG00000000364 | ||
Aliases: | None | ||
Description: | mitochondrial import receptor subunit TOM22 homolog [Source:RefSeq peptide;Acc:NP_001247961] |
Percent Identity: | 81.95 % |
Parental protein coverage: | 92.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVRSAAGAT-FDLSLFVAQKMYR |
G.P.SP.ELLPKGDA.K..EELEEDD.EELDETLSERLWGLT.MFP.RV..AA....F.LSLFVAQKMYR | |
Retrocopy | GTPASPEELLPKGDAAKTKEELEEDDEEELDETLSERLWGLTVMFPKRVQLAARTS<FFLSLFVAQKMYR |
Parental | FSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI |
FSRAA.WIG.TSFMILVLPVVFETEK.QMEQQQ..Q.RQILL.PNTGLSGGM.GALPSLPGKI | |
Retrocopy | FSRAAVWIGNTSFMILVLPVVFETEKMQMEQQQ--QPRQILLRPNTGLSGGMQGALPSLPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .20 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .04 RPM |
SRP007412_cerebellum | 0 .06 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 8 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .86 RPM |
SRP007412_liver | 0 .00 RPM | 6 .49 RPM |
SRP007412_testis | 0 .00 RPM | 12 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_907 |
Pan troglodytes | retro_ptro_627 |
Gorilla gorilla | retro_ggor_734 |
Pongo abelii | retro_pabe_782 |