RetrogeneDB ID: | retro_hsap_907 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:86969893..86970300(-) | ||
Located in intron of: | ENSG00000166575 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213287 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TOMM22 | ||
Ensembl ID: | ENSG00000100216 | ||
Aliases: | TOMM22, 1C9-2, MST065, MSTP065, TOM22 | ||
Description: | translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:HGNC Symbol;Acc:18002] |
Percent Identity: | 82.48 % |
Parental protein coverage: | 95.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVRSAAGAT-FDLSLFVAQ |
AA.AGEP.SP.ELLPKGD.EK..EELEEDD.E.LDET.SERLWGL.EMFP.RVRSAA....F.LSLFVA. | |
Retrocopy | AAVAGEPLSPEELLPKGDVEKTKEELEEDDEEKLDETWSERLWGLMEMFPKRVRSAARTS<FFLSLFVAH |
Parental | KMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI |
KMYRF.RAA.WIGTTSFMILVLPVVFETEK.Q.EQQQQLQQ.QILLGPNTGLSG.M.GALPSLPGKI | |
Retrocopy | KMYRFPRAAVWIGTTSFMILVLPVVFETEKMQTEQQQQLQQQQILLGPNTGLSGRMQGALPSLPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 28 .25 RPM |
bodymap2_adrenal | 0 .00 RPM | 36 .85 RPM |
bodymap2_brain | 0 .00 RPM | 21 .80 RPM |
bodymap2_breast | 0 .00 RPM | 31 .40 RPM |
bodymap2_colon | 0 .00 RPM | 30 .34 RPM |
bodymap2_heart | 0 .04 RPM | 30 .77 RPM |
bodymap2_kidney | 0 .00 RPM | 34 .60 RPM |
bodymap2_liver | 0 .02 RPM | 35 .34 RPM |
bodymap2_lung | 0 .00 RPM | 30 .12 RPM |
bodymap2_lymph_node | 0 .00 RPM | 39 .42 RPM |
bodymap2_ovary | 0 .00 RPM | 31 .77 RPM |
bodymap2_prostate | 0 .00 RPM | 59 .67 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 38 .39 RPM |
bodymap2_testis | 0 .00 RPM | 43 .36 RPM |
bodymap2_thyroid | 0 .02 RPM | 28 .23 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 53 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_627 |
Gorilla gorilla | retro_ggor_734 |
Pongo abelii | retro_pabe_782 |
Macaca mulatta | retro_mmul_1113 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |