RetrogeneDB ID: | retro_mmus_1884 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:5283649..5284058(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080820 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tomm22 | ||
Ensembl ID: | ENSMUSG00000022427 | ||
Aliases: | Tomm22, 2310047D01, Tom22 | ||
Description: | translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:MGI Symbol;Acc:MGI:2450248] |
Percent Identity: | 69.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAAAVAAAGAGEPLSPEELLPKAEAEKAEEELEEDDDDELDETLSERLWGLTEMFPERVRSAAGATFDLS |
MA...AAA...EPL.P.ELLPKA...K.E.ELEED...EL.ET..ERLWGLTEMFPERV.SAAGAT.... | |
Retrocopy | MATTSAAARPEEPLPPKELLPKAKTQKNEGELEEDKAGELGETPLERLWGLTEMFPERVWSAAGATL--- |
Parental | LFVAQKMYR-FSRAALWIGTTSFMILVLPVV-FETEKLQMEQQQQLQQRQILLGPNTG-LSGGMPGALPP |
.FV..KM.R.FSRA.LWIGTTS.M.LV..VV.FETEK.QMEQQQQ....QILLGPNTG.LSG.MPGALP. | |
Retrocopy | FFVTEKMHR>FSRATLWIGTTSCMVLVRSVV>FETEKVQMEQQQQ---QQILLGPNTG<LSGRMPGALPL |
Parental | LPGKM |
LPGK. | |
Retrocopy | LPGKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 29 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .63 RPM |
SRP007412_heart | 0 .00 RPM | 30 .26 RPM |
SRP007412_kidney | 0 .00 RPM | 24 .52 RPM |
SRP007412_liver | 0 .00 RPM | 19 .69 RPM |
SRP007412_testis | 0 .05 RPM | 84 .07 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1323 |