Parental gene: | ENSCJAG00000011731 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:201047480..201049958(+) |
>ENSCJAG00000011731
ATGGCTGCCGCCGTCGCTGCTGCCGGTGCAGGGGAACCTCAGTCCCCGGACGAATTGCTCCCGAAAGGCGACGCGGAGAA
GACTGAGGAGGAGCTGGAGGAGGACGACGACGACGAGCTAGATGAGACCCTGTCGGAGAGACTATGGGGCCTGACGGAGA
TGTTTCCGGAGAGGGTACGGTCCGCGGCGGGGGCCACTTTTGATCTCTCCCTCTTTGTGGCTCAAAAAATGTACAGGTTT
TCCAGGGCAGCCTTGTGGATTGGGACCACTTCCTTTATGATCCTGGTTCTTCCAGTTGTCTTTGAAACTGAGAAGTTGCA
AATGTCTCGAACCTGGGTTGACCAACAGTTAATGATACTTCTAGGGCCTAACACAGGGCTCTCAGGAGGAATGCCAGGGG
CTCTACCTTCACTTCCTGGAAAGATTTAG
ATGGCTGCCGCCGTCGCTGCTGCCGGTGCAGGGGAACCTCAGTCCCCGGACGAATTGCTCCCGAAAGGCGACGCGGAGAA
GACTGAGGAGGAGCTGGAGGAGGACGACGACGACGAGCTAGATGAGACCCTGTCGGAGAGACTATGGGGCCTGACGGAGA
TGTTTCCGGAGAGGGTACGGTCCGCGGCGGGGGCCACTTTTGATCTCTCCCTCTTTGTGGCTCAAAAAATGTACAGGTTT
TCCAGGGCAGCCTTGTGGATTGGGACCACTTCCTTTATGATCCTGGTTCTTCCAGTTGTCTTTGAAACTGAGAAGTTGCA
AATGTCTCGAACCTGGGTTGACCAACAGTTAATGATACTTCTAGGGCCTAACACAGGGCTCTCAGGAGGAATGCCAGGGG
CTCTACCTTCACTTCCTGGAAAGATTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 12 .88 RPM |
| SRP051959_skeletal_muscle | 13 .23 RPM |
| SRP051959_lymph_node | 14 .89 RPM |
| SRP051959_lung | 11 .76 RPM |
| SRP051959_liver | 11 .98 RPM |
| SRP051959_kidney | 14 .42 RPM |
| SRP051959_heart | 9 .96 RPM |
| SRP051959_colon | 12 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010692 | ortholog_many2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000001383 | ortholog_many2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000005963 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000010359 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000006428 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000544 | ortholog_one2many | 7 retrogenes | |
| Homo sapiens | ENSG00000100216 | ortholog_one2many | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013230 | ortholog_one2many | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000002901 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011792 | ortholog_one2many | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003761 | ortholog_many2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000000364 | ortholog_one2many | 8 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013156 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000022427 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000015159 | ortholog_one2many | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000029583 | ortholog_many2many | 9 retrogenes | |
| Pongo abelii | ENSPPYG00000011825 | ortholog_one2many | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000014374 | ortholog_one2many | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000014058 | ortholog_one2many | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000000097 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000015683 | ortholog_one2many | 4 retrogenes | |
| Vicugna pacos | ENSVPAG00000001485 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_94 | 70.83 | 67.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_498 | 88.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1220 | 95.07 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1230 | 67.62 | 73.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3675 | 56.18 | 61.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011731 retrocopies