RetrogeneDB ID:

retro_lafr_927

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_5:61393483..61393717(+)
Located in intron of:ENSLAFG00000009316
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:COX7B
Ensembl ID:ENSLAFG00000022996
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_927
ATTTTTCCCATGGCCAAAAATGCACTAAGTCATCTTCGAGTTCGAAGCATTCAGCAAACGATGGCAAGGCAAACCCACCA
GAAATATGCACCTGATTTCCATGACAATATGGTAATGCTTGTGGAGCTACTTACTGTCTATGTTGCTGTATGGACACATA
CAGCAACACAAACTGGCACAGAATGGAACCTGTCCCCTGTAGGCAGAGTCACCCCAAAGGAATGGAGAGATCAG

ORF - retro_lafr_927 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.75 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMFSMAKNALSRLQVRSIQQTMARQSHQKRAPDFHDKYGNAILASGATFCVALWTYVTTQIGIEWNLSPVG
.F.MAKNALS.L.VRSIQQTMARQ.HQK.APDFHD......L....T..VA.WT...TQ.G.EWNLSPVG
RetrocopyIFPMAKNALSHLRVRSIQQTMARQTHQKYAPDFHDNM--VMLVELLTVYVAVWTHTATQTGTEWNLSPVG
ParentalRITPKEWRDQ
R.TPKEWRDQ
RetrocopyRVTPKEWRDQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_927 was not experimentally validated.

Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 101 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000061536 retrocopies
Bos taurus ENSBTAG000000477683 retrocopies
Callithrix jacchus ENSCJAG000000040455 retrocopies
Cavia porcellus ENSCPOG000000147812 retrocopies
Echinops telfairi ENSETEG000000166959 retrocopies
Felis catus ENSFCAG000000230912 retrocopies
Homo sapiens ENSG000001311744 retrocopies
Gorilla gorilla ENSGGOG000000233479 retrocopies
Loxodonta africana ENSLAFG00000022996 4 retrocopies
Microcebus murinus ENSMICG000000145213 retrocopies
Myotis lucifugus ENSMLUG000000224433 retrocopies
Macaca mulatta ENSMMUG000000158615 retrocopies
Mus musculus ENSMUSG000000312315 retrocopies
Pongo abelii ENSPPYG0000002049418 retrocopies
Pan troglodytes ENSPTRG000000220499 retrocopies
Pteropus vampyrus ENSPVAG000000032372 retrocopies
Rattus norvegicus ENSRNOG000000284515 retrocopies
Sus scrofa ENSSSCG000000309702 retrocopies
Tursiops truncatus ENSTTRG000000043873 retrocopies
Vicugna pacos ENSVPAG000000013242 retrocopies



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