RetrogeneDB ID: | retro_rnor_2959 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:105321525..105321761(-) | ||
Located in intron of: | ENSRNOG00000037711 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox7b | ||
Ensembl ID: | ENSRNOG00000028451 | ||
Aliases: | None | ||
Description: | Cytochrome c oxidase subunit 7B, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P80431] |
Percent Identity: | 91.25 % |
Parental protein coverage: | 98.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LPLAK-NALSRLQVRSIQQVVARQSHQKKTPTFHDKYGNAVLAGGSIFCISAWTYTATQIGIEWNLSPVG |
LPLAK.NALS.LQVRSIQQVVARQSHQK.TPTFHDKYGNAVLAG.SIFC.SAWTYTATQI.IEWNLS.VG | |
Retrocopy | LPLAK<NALSHLQVRSIQQVVARQSHQKMTPTFHDKYGNAVLAGRSIFCVSAWTYTATQI*IEWNLSSVG |
Parental | RVTPKEWRDQ |
RVTPKEWRDQ | |
Retrocopy | RVTPKEWRDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 39 .83 RPM |
SRP017611_kidney | 0 .28 RPM | 101 .04 RPM |
SRP017611_liver | 0 .20 RPM | 43 .23 RPM |