RetrogeneDB ID: | retro_mmul_1123 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:110357766..110358021(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.16850 | ||
Ensembl ID: | ENSMMUG00000019544 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L37a [Source:RefSeq peptide;Acc:NP_001252654] |
Percent Identity: | 81.18 % |
Parental protein coverage: | 92.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAV |
VGIVGKY....GASL.KMVK.IEI..HAKYTCSF.GKTKMKR.AV.I.HCGSCMKTVAG.A.TYNTTSAV | |
Retrocopy | VGIVGKYRSHCGASLWKMVKEIEIGLHAKYTCSFYGKTKMKR*AVKIRHCGSCMKTVAGSAGTYNTTSAV |
Parental | TVKSAIRRLKELKDQ |
.VKSAIR.LKELKDQ | |
Retrocopy | MVKSAIRKLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .63 RPM | 95 .20 RPM |
SRP007412_cerebellum | 0 .71 RPM | 22 .79 RPM |
SRP007412_heart | 0 .12 RPM | 35 .86 RPM |
SRP007412_kidney | 0 .35 RPM | 24 .76 RPM |
SRP007412_liver | 0 .04 RPM | 51 .18 RPM |
SRP007412_testis | 0 .00 RPM | 24 .58 RPM |