RetrogeneDB ID: | retro_ggor_633 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:27868038..27868314(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSGGOG00000014827 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKRTKKVGIVGKYGTRYGASLRKMVKK-IEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAW |
MAK.TKKV.IV.KYGTRYGASLRKM.KK.IEI.QH.KY.C.FCGKTKMKR.A.GI.HC.SCMKTVAG.AW | |
Retrocopy | MAKCTKKVRIVSKYGTRYGASLRKMAKK>IEITQHTKYICCFCGKTKMKR*ATGIRHCNSCMKTVAGSAW |
Parental | TYNTTSAVTVKS-AIRRLKELKDQ |
TYNTTSAVTVKS.AIRRLKE.KDQ | |
Retrocopy | TYNTTSAVTVKS<AIRRLKEFKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 158 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 165 .87 RPM |
SRP007412_heart | 0 .00 RPM | 136 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 363 .87 RPM |
SRP007412_liver | 0 .00 RPM | 317 .93 RPM |
SRP007412_testis | 0 .00 RPM | 268 .74 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_764 |
Pan troglodytes | retro_ptro_535 |