RetrogeneDB ID: | retro_mdom_521 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:141020874..141021150(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSMODG00000025485 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 90.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT |
.AK.TKKV.IVGKYGT.YGA.LRKMVKKIEISQH.KYTCSFCGKTKMKR.A.GIWHCGSCMKTVAGGAWT | |
Retrocopy | IAKCTKKVRIVGKYGTYYGAFLRKMVKKIEISQHTKYTCSFCGKTKMKRCAMGIWHCGSCMKTVAGGAWT |
Parental | YNTTSAVTVKSAIRRLKELKDQ |
YNT.SAVTVKSAIRRLKELKDQ | |
Retrocopy | YNTISAVTVKSAIRRLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .36 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .33 RPM | 0 .00 RPM |
SRP007412_heart | 0 .20 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .39 RPM | 0 .00 RPM |