RetrogeneDB ID: | retro_mmul_1639 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:144876211..144876486(+) | ||
Located in intron of: | ENSMMUG00000015411 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.16850 | ||
Ensembl ID: | ENSMMUG00000019544 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L37a [Source:RefSeq peptide;Acc:NP_001252654] |
Percent Identity: | 63.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAKRTKKVGIVGKYGTR-YGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAW |
..K.TK.V.I.GKYG...YG.SL.K..KK.EIS..AKYTCSFCG.TKMK..AVGI.HCGS.MKTVA.GAW | |
Retrocopy | LLKLTK*VEIIGKYGIA<YGTSLWKTLKKTEISHPAKYTCSFCG*TKMKKQAVGILHCGSYMKTVADGAW |
Parental | TYNTTSAVTVKSAIRRLKELKDQ |
.YN.T.....K..I.RLK.LK.Q | |
Retrocopy | IYNATFTNMAKLVIKRLKKLKGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 95 .20 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .79 RPM |
SRP007412_heart | 0 .06 RPM | 35 .86 RPM |
SRP007412_kidney | 0 .35 RPM | 24 .76 RPM |
SRP007412_liver | 0 .00 RPM | 51 .18 RPM |
SRP007412_testis | 0 .04 RPM | 24 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3773 |
Pan troglodytes | retro_ptro_2558 |
Gorilla gorilla | retro_ggor_2538 |