RetrogeneDB ID: | retro_nleu_239 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397262.1:12960022..12960535(+) | ||
Located in intron of: | ENSNLEG00000006955 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSNLEG00000002802 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SLMDPDTKLIGNMAL-LPIRSQFKG-APRETKDTDIVDEA-IYYFKANVFFKNYEIKNEADRTLIYITLY |
SLMDPDTKLIGN.AL.LPIRSQFKG.APRETKDTDIVDEA.IYYFKA.VFFKNYEIKNEADRTLIYI.LY | |
Retrocopy | SLMDPDTKLIGNIAL<LPIRSQFKGPAPRETKDTDIVDEA<IYYFKAHVFFKNYEIKNEADRTLIYISLY |
Parental | ISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPA-NKQEDEVMRAYLQQLRQETGLR |
ISECLKKLQKCNSKSQGEKEMYTLGIT.FPIPG.PGFPLNAIY.KPA..K.EDEVMRAYLQQLRQETGLR | |
Retrocopy | ISECLKKLQKCNSKSQGEKEMYTLGITSFPIPGDPGFPLNAIYTKPA<KK*EDEVMRAYLQQLRQETGLR |
Parental | LCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ |
LCE.VFDPQNDKPSKWWTCFVKRQF.NKSLSG.GQ | |
Retrocopy | LCEEVFDPQNDKPSKWWTCFVKRQFVNKSLSGTGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008456 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009360 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004987 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011531 | 2 retrocopies | |
Felis catus | ENSFCAG00000004132 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000006166 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000006492 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011628 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002802 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011908 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013424 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000003785 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011858 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004947 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014805 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000002953 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015083 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008404 | 1 retrocopy |