RetrogeneDB ID: | retro_eeur_122 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7555:10556..10845(-) | ||
Located in intron of: | ENSEEUG00000011265 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSEEUG00000011531 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 77.55 % |
Parental protein coverage: | 55.11 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | LYISECLKKLQKCNS-KSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETG |
LYISECLKKLQK..S.K.QGEKEMY.LGITNFP..GE.GFPLNAIYAKP.NK..DEVMRAYLQ.LRQE.G | |
Retrocopy | LYISECLKKLQKVQS>KNQGEKEMYILGITNFPTLGELGFPLNAIYAKPENK-*DEVMRAYLQ*LRQEMG |
Parental | LRLCEKVFDPQNDKPSKWWTCFVKRQFM |
LR.C...FD..N.KPSKW.T.FVKRQFM | |
Retrocopy | LRFCVILFDS*NNKPSKW*T*FVKRQFM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 107 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 102 .40 RPM |
SRP017611_liver | 0 .00 RPM | 51 .93 RPM |